Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3713 ATGTCTACTAAAGATGCTGTCGCAACTTCTATATTATCCAAAAGGTGGAAGTATTTGTGGATGGATTTATTTGCATTTAACTTTGCAATTTATAGCAACCAAAGTGACAGCGGAATTTGCAATCCAACAAATCATCTCTTAGATCTTGTTCATAGATTACTTCATAGATCTAATAGTCGTCCAATTAGTCTCACCATTGCAATGTATGGTAGCGGAATTACCGTTGATCCAGTCAAGCTTCATTGTCTTTTATCTGATGCAAACATGTACAAAGTTGAAGAACTCGATATTTCTCTAAATTTAAAGTCTAATCCGTTTATATTACCACAAAGTTTCTCAACTTGTGCATCATTCAACAATTTACATTTACAACTTGAGTGTGTTCTAAATGTTCCGAGTTGCATTTGTTTTTCTAATTTGAAGATGTTAAATATTTCATCGGTTACATTTTCAAACGATGATTCTCTTCAAAAACTTCTCTCCGGATGTGTTGTCCTCCAAGAATTAATCATGTTTGGTTGTGGTTGGAATAACATAAAGCATGTCAATATTGCAATGTCAACATTAAGGAAATTAAACATGGACTTCAACTATCCAACGGATGATGAGCTTTTCGGTTCTAAAATTGAGATTGATGCGGTGAATCTCTTATCTTTCACATGCTCAGGCTTTTTAACGGTTGAAGTTTCCCTTGTTAACCTAGCCTCTATAGTTGATGCATATATTGATCTTCAGATTTACTTTCCACTAAATCAACCATATATTGCTGCTCATGAAATTAAACTATTGACTGGACTTCATCATGTCAAATCTCTCTGGCTATCAAATGATACTCTTGAGTGTCTTTCCTTTGCGGAAGATAATTTCCATTTCCTTCCTTCATTCTATGATTTGAAGCGTCTTGGTGTGAATTTTGGAAGTGTTGCTGGTTATACAAATGCATTTCTAATGGGTTTTCTCAAAAAGACTCCAAAACTTGAAGCACTTGAGATTCCTAATGGATTTGATCCAATCATTTGCATGGATGGTGAAGAGTGGATAATGAATTCAGTGCCTTTGTGTTTCAAAACTTGTCTCAATTTATTTTGCTTTTCTAATTTTGATGGAGATGAAGCTGAAATCCAATTCCTGAAATCGGAGAGGTGTCCAAAAGGTTTGTGCAGCGTTATGGAAAACTTAGCAAGGAAGAAATCTCTTCCTTTTCCAAAAGAAGACCTTCAACCCAGCAGGTTCTTTGCTAAAGATAGAGAGGGTGCTAAAATCACGCATGCTTTCAAAAAGGCAGTTATGTCAGTGGATCCTTGTATTGCAAAAATGCAGATATTTGTGGAGACTTTAAAAGGAAAAAGTGTTGAAACTATGAGTTTGGAGGTTGAGAGTTCAGATAGAATTGATGATGTGAAAGGTAAGATTGAGGATAAGGAGGGTATTCCACGAGATAAACAAAGGCTTATATATGGAGGGAGAACACTTAAAGATGGAAGGACCCTAGATGATTATTACATCCGGAAGGAATACACTCTCGATCTGGTTTTGGAGCAAGCTGGGGGGATGGAAATTCTTGTTAAGATCTTTAATGGAAAGACCATAACTTTGGAGGTAGAAAGTTGTGATACAATCGAGAAAGTTAAGGCGAAAATTGAGGATAAAGAGGGAATTCCCGCAGACAAACAGAATCTAATTTTCTTTGGCAAAGCATTGAATGATGGTGGCACTCTGGCTGATTATAATATCCAGAAGGATAACCCTTACTGGGAAAACAAATCTCCGGAGTTGAAAGCTCTCATACTATGGATAAGCGAGGATACATGA 1812 0.3631 MSTKDAVATSILSKRWKYLWMDLFAFNFAIYSNQSDSGICNPTNHLLDLVHRLLHRSNSRPISLTIAMYGSGITVDPVKLHCLLSDANMYKVEELDISLNLKSNPFILPQSFSTCASFNNLHLQLECVLNVPSCICFSNLKMLNISSVTFSNDDSLQKLLSGCVVLQELIMFGCGWNNIKHVNIAMSTLRKLNMDFNYPTDDELFGSKIEIDAVNLLSFTCSGFLTVEVSLVNLASIVDAYIDLQIYFPLNQPYIAAHEIKLLTGLHHVKSLWLSNDTLECLSFAEDNFHFLPSFYDLKRLGVNFGSVAGYTNAFLMGFLKKTPKLEALEIPNGFDPIICMDGEEWIMNSVPLCFKTCLNLFCFSNFDGDEAEIQFLKSERCPKGLCSVMENLARKKSLPFPKEDLQPSRFFAKDREGAKITHAFKKAVMSVDPCIAKMQIFVETLKGKSVETMSLEVESSDRIDDVKGKIEDKEGIPRDKQRLIYGGRTLKDGRTLDDYYIRKEYTLDLVLEQAGGMEILVKIFNGKTITLEVESCDTIEKVKAKIEDKEGIPADKQNLIFFGKALNDGGTLADYNIQKDNPYWENKSPELKALILWISEDT* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3713 603 Pfam Ubiquitin family 441 514 IPR000626 GO:0005515
Psa7g3713 603 Pfam Ubiquitin family 520 581 IPR000626 GO:0005515
Psa7g3713 603 ProSitePatterns Ubiquitin domain signature. 544 569 IPR019954 -
Psa7g3713 603 ProSiteProfiles Ubiquitin domain profile. 518 582 IPR000626 GO:0005515
Psa7g3713 603 PANTHER UBIQUITIN 438 581 - -
Psa7g3713 603 ProSitePatterns Ubiquitin domain signature. 468 493 IPR019954 -
Psa7g3713 603 ProSiteProfiles Ubiquitin domain profile. 439 517 IPR000626 GO:0005515
Psa7g3713 603 SUPERFAMILY L domain-like 78 301 - -
Psa7g3713 603 Gene3D - 435 516 - -
Psa7g3713 603 Gene3D - 517 585 - -
Psa7g3713 603 PANTHER - 438 581 - -
Psa7g3713 603 Gene3D Ribonuclease Inhibitor 1 212 IPR032675 -
Psa7g3713 603 SMART ubq_7 439 513 IPR000626 GO:0005515
Psa7g3713 603 SMART ubq_7 518 600 IPR000626 GO:0005515
Psa7g3713 603 PRINTS Ubiquitin signature 452 472 IPR019956 -
Psa7g3713 603 PRINTS Ubiquitin signature 473 493 IPR019956 -
Psa7g3713 603 PRINTS Ubiquitin signature 494 515 IPR019956 -
Psa7g3713 603 Pfam Leucine Rich Repeat 139 163 IPR013101 -
Psa7g3713 603 SUPERFAMILY Ubiquitin-like 517 581 IPR029071 -
Psa7g3713 603 SUPERFAMILY Ubiquitin-like 434 517 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3713 Psa-Chr7 313890012 313896336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3713 518 582 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 72.308 8.46e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3713 - - mtr:MTR_4g081030 296.975