Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3712 GTTGTGTGGCTATTCAATAAAAATCTGAAAGCTCTTATTTTCTTCTTAGGAAATATCTACGATTTCAAGATGCAAATCTTTGTGAAAACATTGACTGGAAAATCAATCACCCTTGAGGTGGAGAGTTCTGATACCGTAGACAATGTGAAAGTTAAGATCCAAGATAAGGAAGGGATTCCACCCGATCAGCAAAGGCTTATCTTTGCTGGAAAACAATTGGAAGATGGTCGTACCCTTGCTGATTACAACATCCAGAAGGAATCCACTCTTCACCTTGTGCTCCGATTGAGAGGTGGAATGCAGATCTTTGTTAAGACCTTGACAGGGAAGACCATCACCCTTGAGGTTGAATCCTCAGATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGCATTCCCCCAGATCAACAAAGGCTTATATTTGCAGGGAAACAGCTTGAAGACGGAAGGACCCTGGCTGATTATAACATCCAGAAGGAATCCACTCTCCATCTTGTTTTGAGGCTTCGTGGGGGTATGCAAATTGTTGTTATGACCCTCAGTAAAAAGACCATAACTTTGGAGGTTGAAAGTTCTGATACAATTGAGAAAGTGAAGGCGAAAATTCAGGAAAAAGAAGGAATTCCCACAGACAAAGAGAATCTAATTTTAGTAGGGAAGGTATTGAAGGATGATTGTACTCTGGATGATTATCAAATCCAGGAGTTTAAAGATCCGATACTATGGTTAACAGAGTATTCAACCAGATCAGAATAG 765 0.3987 VVWLFNKNLKALIFFLGNIYDFKMQIFVKTLTGKSITLEVESSDTVDNVKVKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIVVMTLSKKTITLEVESSDTIEKVKAKIQEKEGIPTDKENLILVGKVLKDDCTLDDYQIQEFKDPILWLTEYSTRSE* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3712 254 PRINTS Ubiquitin signature 110 130 IPR019956 -
Psa7g3712 254 PRINTS Ubiquitin signature 131 151 IPR019956 -
Psa7g3712 254 PRINTS Ubiquitin signature 152 173 IPR019956 -
Psa7g3712 254 ProSiteProfiles Ubiquitin domain profile. 176 238 IPR000626 GO:0005515
Psa7g3712 254 Pfam Ubiquitin family 178 238 IPR000626 GO:0005515
Psa7g3712 254 Pfam Ubiquitin family 26 97 IPR000626 GO:0005515
Psa7g3712 254 Pfam Ubiquitin family 102 173 IPR000626 GO:0005515
Psa7g3712 254 CDD Ubl_ubiquitin 24 99 - -
Psa7g3712 254 PANTHER UBIQUITIN 24 189 - -
Psa7g3712 254 PANTHER UBIQUITIN 100 238 - -
Psa7g3712 254 CDD Ubl_ubiquitin 100 175 - -
Psa7g3712 254 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Psa7g3712 254 SUPERFAMILY Ubiquitin-like 99 175 IPR029071 -
Psa7g3712 254 ProSitePatterns Ubiquitin domain signature. 126 151 IPR019954 -
Psa7g3712 254 Gene3D - 20 99 - -
Psa7g3712 254 Gene3D - 100 176 - -
Psa7g3712 254 SUPERFAMILY Ubiquitin-like 175 238 IPR029071 -
Psa7g3712 254 SUPERFAMILY Ubiquitin-like 23 99 IPR029071 -
Psa7g3712 254 SMART ubq_7 24 95 IPR000626 GO:0005515
Psa7g3712 254 SMART ubq_7 100 171 IPR000626 GO:0005515
Psa7g3712 254 SMART ubq_7 176 249 IPR000626 GO:0005515
Psa7g3712 254 ProSiteProfiles Ubiquitin domain profile. 100 175 IPR000626 GO:0005515
Psa7g3712 254 ProSitePatterns Ubiquitin domain signature. 50 75 IPR019954 -
Psa7g3712 254 Gene3D - 177 250 - -
Psa7g3712 254 PANTHER POLYUBIQUITIN 12 100 238 - -
Psa7g3712 254 PANTHER POLYUBIQUITIN 12 24 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3712 Psa-Chr7 313869832 313871368 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3712 176 238 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 68.254 3.49e-20 82.0