Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3710 ATGCAAATTGTTGTTAAGACCATTACTGAAAAGACCTTAACTTTGGAGGTTGAAAGTTCTGATACAATTGGTAGTGTAAAGGCGAAAGTTCAGGATAAAGAGGGAATTCCTTCAGACAAACAAAAGCTAATATTTGCTGGGAAGCAATTGGAGGATGGTCGTACTCTGGCTAACTGTAATGTACAGAACGGATCTATTCTGCACTTGTTGTTGAGGCTTCGTGGTGGGATGCAAATATTTGTGAAAACACTTACCTTGGAGGTGTAA 267 0.3933 MQIVVKTITEKTLTLEVESSDTIGSVKAKVQDKEGIPSDKQKLIFAGKQLEDGRTLANCNVQNGSILHLLLRLRGGMQIFVKTLTLEV* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3710 88 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Psa7g3710 88 PRINTS Ubiquitin signature 11 31 IPR019956 -
Psa7g3710 88 PRINTS Ubiquitin signature 32 52 IPR019956 -
Psa7g3710 88 PRINTS Ubiquitin signature 53 74 IPR019956 -
Psa7g3710 88 SUPERFAMILY Ubiquitin-like 1 77 IPR029071 -
Psa7g3710 88 PANTHER UBIQUITIN 1 85 - -
Psa7g3710 88 SMART ubq_7 1 72 IPR000626 GO:0005515
Psa7g3710 88 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Psa7g3710 88 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Psa7g3710 88 Gene3D - 1 78 - -
Psa7g3710 88 PANTHER - 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3710 Psa-Chr7 313694712 313695732 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3710 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 76.623 3.33e-38 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3710 - K08770 sly:101258282 137.117