Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3654 ATGACAAGAGGCAGATTAGTGGAACGTGGCCCCAGTGGAAGCCAAAATCATGGTAGATCAAAATCTCGAAGTAAGATGAATGTGAGATGCTACAATTGTGGCAAGAAAGGGCACTTGAAAAGAGATTGTTGGTTTAAGAAGAACGGTGAGAAGTCTTCTGAGGCAAGTTCATCTCAAGGATGTATTGCCAATACCTCTGATGATAGAGAGATTCTATATAGCGGAGCAACAAATAATTCCAAAGAGAATGAACTGCAAAGGGAGCAGGAAAATGATAGAACTTCTAAAGATATCACTACTGTTCATATAGATGGAAAGTCTGTTGAAGATGATTCTTTTGAAGCAGAACCAGAGCACGAGGTACAAGAACCAGAGGAACCCGATGGTGTTGAAGTTCAACGATCAACACGTCAGAAAAGGAAACCAGATTGGCAGTCAGACTATGTTATGGCAAGCCATGATGCATATTGTCTTCTAACCGAAGATGGAGAACCATCAACCTTTCAAGAGGCTAGTAGTACTACAAGCTCTGAACTCCCTCCTGGCTTTAGATTTCACCCAACTGATGAAGAATTGATTGTGTATTACCTTTGTAATCAAGCCACATCAAAGCCATGTCCTGCTTCTATCATACCAGAAGTTGATATCTATAAATTTGATCCATGGGAATTGCCAGATAAATCGGAGTTTGCAGAGAATGAATGGTATTTCTTTAGTCCAAGAGAAAGAAAGTACCCAAATGGGGTGAGGCCTAATAGAGCAACTTTATCTGGTTACTGGAAAGCTACTGGCACAGACAAACCAATCAACACTGGATCAAAGCAAATTGGAGTCAAAAAATCTTTAGTCTTTTACAAGGGTAGGCCACCAAAGGGAATCAAAACTAATTGGATCATGCACGAGTATCGATTAATCGGATCACAAAAACAAACTAGCAAACATATTGGATCCATGAGGCTAGATGACTGGGTTTTGTGCAGGATCTATAAGAAGAAACACATGCAAAAAACATCGCAGCAAAAAGAGGACTATTCAACTCTTCAGTTCAATGATTCTACGATAGCGAATAACAACGAACAAGAAAGGATGAACATGAACCTGAACCTTACAAGAAGTTGTTCACTTACTTATCTTTTAGATATGAATTACTTTACTCCAATCTTATCTGATGGTTCAACTTTTGATTTTCAAATCAATAATTCAAATATTGGGATAGACCCTTTTGTAAAACCTCAGCAAGTTGAAATGAGTAACCATTATGAAGCAGATTCGATCACAAATCAGTCATTCTTTGTGAAGCAAATGTATAATTCTTTAGGATAA 1323 0.3825 MTRGRLVERGPSGSQNHGRSKSRSKMNVRCYNCGKKGHLKRDCWFKKNGEKSSEASSSQGCIANTSDDREILYSGATNNSKENELQREQENDRTSKDITTVHIDGKSVEDDSFEAEPEHEVQEPEEPDGVEVQRSTRQKRKPDWQSDYVMASHDAYCLLTEDGEPSTFQEASSTTSSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFAENEWYFFSPRERKYPNGVRPNRATLSGYWKATGTDKPINTGSKQIGVKKSLVFYKGRPPKGIKTNWIMHEYRLIGSQKQTSKHIGSMRLDDWVLCRIYKKKHMQKTSQQKEDYSTLQFNDSTIANNNEQERMNMNLNLTRSCSLTYLLDMNYFTPILSDGSTFDFQINNSNIGIDPFVKPQQVEMSNHYEADSITNQSFFVKQMYNSLG* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3654 440 Pfam No apical meristem (NAM) protein 180 304 IPR003441 GO:0003677|GO:0006355
Psa7g3654 440 MobiDBLite consensus disorder prediction 13 27 - -
Psa7g3654 440 ProSiteProfiles Zinc finger CCHC-type profile. 29 43 IPR001878 GO:0003676|GO:0008270
Psa7g3654 440 MobiDBLite consensus disorder prediction 83 113 - -
Psa7g3654 440 SUPERFAMILY Retrovirus zinc finger-like domains 12 49 IPR036875 GO:0003676|GO:0008270
Psa7g3654 440 SUPERFAMILY NAC domain 173 331 IPR036093 GO:0003677|GO:0006355
Psa7g3654 440 SMART c2hcfinal6 29 45 IPR001878 GO:0003676|GO:0008270
Psa7g3654 440 Gene3D NAC domain 188 336 IPR036093 GO:0003677|GO:0006355
Psa7g3654 440 ProSiteProfiles NAC domain profile. 179 331 IPR003441 GO:0003677|GO:0006355
Psa7g3654 440 PANTHER BNAC06G30680D PROTEIN 177 403 - -
Psa7g3654 440 Pfam Zinc knuckle 29 43 IPR001878 GO:0003676|GO:0008270
Psa7g3654 440 Gene3D - 6 58 - -
Psa7g3654 440 MobiDBLite consensus disorder prediction 1 27 - -
Psa7g3654 440 MobiDBLite consensus disorder prediction 126 145 - -
Psa7g3654 440 MobiDBLite consensus disorder prediction 74 145 - -
Psa7g3654 440 PANTHER NAC TRANSCRIPTION FACTOR 56 177 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3654 Psa-Chr7 308322964 308330533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3654 174 395 NAC Transcription Factor Family AT1G69490 64.655 8.23e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa7g3654 NAM 6.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3654 - - gmx:100785110 396.741