Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3570 ATGAAGAGATTGAGGTCAAGTGAAGATCTTCACTCGTACAATAACGCTGGTGATAAGAACGGTGATAAGAATGGTTTTAAGGATTCGAATCTGAACCGTTCGTTTTCTTCTACTGGCCAGAGAAGCTTTTATTACAAACAAGAGAATGTTCGCAAGGGTTTAATCTCGTCCTCTTCGTCACGCTACGAAAGGGATCGGACTGTGGAGGAAGATCGGGAGGGTCCGAGATTGGTTCGGAAACGATCTGACCATGATTTTGATGGTTTTGATCGGAGGAAGGGTTTTGATCGGTATAGCCGGGATGGTGGTGGTTACAGCGGTGGTGTTGGTGGAGGTGGAAGTGGAGATAGGAATTCGATTCATAGGTCGGAGAGTTTCAGTGGACCGAGGAGGGAGTTTCCGAAGGGGTTTCGTTCGGAGCGGGATCGGTCGAGAAGGGAGGGGAGTGTATCTTCGTGGAGAAGAGGGTTGAAGGATTTTGATGAGAGTGGTAGAGGGAGTAATAGTAGAGTTGAAGAGAGAGTAGTGCGGTCACCTAAGGGGTGTTTTCCGAAGGAGGTGAAATCACCTAGTTGGTCGAAGGATTCTGAGAGTGAACAATCGAAGAAGAGATCTTCTTCTCCAAGGGTGTTTAGAGATGCTAAGTCAGTGTCAAAGTCACCTTCTGGGTCTAAGGATTCGGAGAGTACACAGTCCAAGAGTGTTAGTGTTGAAGTGAAGAAAACTGAAGAGTTATCACAACAGGTCCAGAGTGGAAGTGGTAGTGAAATGGAAGAGGGCGAGCTTGAACCTGAACCACTCCCTAAATTCGAACCCGAACCGGCTTCTAAAGATGCTGCAGCTGGAAGTGAAATCCAGCAAACCTCTGAGGACAAACAAGTTCATAAGCAGAATGAAGGCTGTTTGACTGATGCAGATGTTGTTATGGAAGAAAAACAGATGTTGTCGAGTGAGAAAGAGGCAAACACTATGGAGGATGTTGATTCTGAGGTAAAAGATGCAGAAAATGAAGTTCATGAATTGCCTAAGACTCAAGATGTTTCAATTAAGGAAACACCTTTTACTGAGACTGTGATTGGAACTGTTGATAAGGATAATGATAAGAAGGATGCGAATTTAAATGGTGATGATACTCCCAAGGAAGAAACAGAGAAGAAAACAAATAAGGAGAAGGCATTGCTTAATGAAGAGGAACATGAGGCGGACAAGGGTGTACATAGTGGTGACAAATCTGAGTCAAATGCTGAAGGCTCAACAGTGAATGCAGTTGCCGAAGTGAAGAGAGAAACAATGTTGGAGAGTGTGACCAACAATGCCAAGGATAAAGGAAAAAGCGTCTCGGTCACACCTGATGTTGCTCATTCTTCAGAAGATAGTTTGTGGGTTGATAGAGGGTCGAAAGATCTCGCAAAATGTCCTGTAGATGCCATGGAAGGTCCGAGCACTAGAGGGTTTGAACTTTTCTCTAGATCTCCTGTGAGAAAAGTAGAGAAGTCTAATCGCTCGGTTCTAAAAGAGGAGAATGATGACAGTCTTGCATTGGGGCAGCTTGATCTTACCCTTAGCTTGCCAAATGTTCTGTTACCAATAGGAGCTCAGGAGACAACAACACAAGCCCCTGGATCTCCAAGTCAAGCACGGAGTGTTCAGTCTCTAAGTAATACATTTTGTACTAACTCTGATGGTTTTACCGCATCAATGTCATTTTCAGGTTCCCAATCACTATATCACAATCCAAGTTGCTCACTTACGAGAAATTCAGTGGACTATGAACAATCTGTTGGCAAATCAGTTGGCAGTCGCCCCTTGTTCCAGGGATTTGATTGGCAAGCCCTATCTCAGGGTGATCCCAAGCCGAAAGAAATTCCCTCTGGTCAGAGAACTTCGATTAATGGGAATGGCTCTCTCTACCAGCCTCAAGCATCATGGGGCATTTTAGATACTCAAACTTTGAAAGGTCAACATTCTAGGGCTCTAGAAGGAAGCTCAAAAATGGGCAGTGGGCTTGAAAGGCAGTTGAGTTTTCATAAGCAGCTTTCAGGACAGTCAAGACGGCACGATGATGTTCGATCTCCTACACAGAGTGTTGGGTCTCATGACAATGGATCAAATTATAGTTTTGAGAAAAAAAGGGAGGTTAAGGAAAGAAGCAGTGGTAGTCTACATCGAACTACTAGTCAGAAGGGACAAGAACAATTTCTGATGGGTGGACTTGATTTTGTTAAGACAATCATTGCAAGAATAGTTTCTGAGCCCGTGCTCCCGATGTCCCGGAAGTTTCATGAAATGAATGCACAGTACATAACGCGTCTGAAAGAGGGTATTCGAGAACTCATGCTCAATTCAGATAACCATGGACAAATACTCGCTTTTCAAAAAGTTTTGATGAACAGGTCTGATATAACCTTGGATGTTCTAGTGAAGTGTCATCGAGTGCAACTGGAAATTTTGGTTGCTTTAAAAACTGGTTTAACGCATTATCTCCACCTAGATGATAATAACATTTCATCTTCTGATTTAGCTCAAGTGTTTCTAAGCTTGAAGTGTAGGAATGTTACATGTCGAAGTCAGTTGCCTGTTGATGAATGTGATTGCAAGGTTTGTGTCCAGAAGAATGGTTTTTGCAGGGAATGTATGTGTCTTGTGTGTTCTAAGTTTGACAATGCATCAAACACATGTAGCTGGGTTGGGTGTGATGTTTGTCTACACTGGTGTCACACTGATTGTGGATTACGAGAATCTTATATCAGAAATGGGCATACTACTGGAATTAAAGGGACGACTGAGATGCAGTTTCACTGCATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAAGAGGTGTTTCAAAGTTTTGCAAAAGAGTGGTCAGCCGAATCTCTTCGCAAGGAGCTTGAATATGTGAAAAGGATCTTTTCTGCAAGCAAGGATATAAGAGGGAGTCAGTTGCACGAGATTGCAGATCAAATGCTGCCGAGGCTGACTAAGTCTAACCTTCCTGAGGTTCTGAGACACATCATGTCTTTCCTTTCTGATTGTGATTCTTCCAAATTAACCATGACAACAAACTTTTCTGGGAAGGAACAAGTCAAAGAAAACAATGGGGTAGCTGGGCCCAGCCAGGAAGCGGCTTGGCTGAAATCTATTTATTCAGAAAAGCCACCACTATTAGAAAGACCTCCAAACATGCTTCCAAGATTTGACCAGAATGATAAAAGGACACTGGTGCAAGAGTTGCCGATGAGTAGTGTTCAAAAGGACTTTGGTTTTGATGAATTGGAAAGTATAGTAAAAATCAAACATGCAGAGGCTAAAATGTTTCAATCTCGTGCTGATGATGCAAGGAGAGAAGCCGAAGGGTTGAAACGCATTGCCCTTGCAAAGAGTGAGAAAATTGAAGAAGAGTATACCAGTCGACTTGCCAAATTAAGATTCTCAGAGACAGATGAATTGCGTAAACAAAAGATAGAAGAACTCCAAGCATTGGAGAGGGCACATCAGGAGTATTTGAACATGAAAAGGAGAATGGAGTCAGAGATTAAAGATCTGTTATCCAAAATGGAAGCTACTAAAATGAACCTTGCCATGTGA 3597 0.429 MKRLRSSEDLHSYNNAGDKNGDKNGFKDSNLNRSFSSTGQRSFYYKQENVRKGLISSSSSRYERDRTVEEDREGPRLVRKRSDHDFDGFDRRKGFDRYSRDGGGYSGGVGGGGSGDRNSIHRSESFSGPRREFPKGFRSERDRSRREGSVSSWRRGLKDFDESGRGSNSRVEERVVRSPKGCFPKEVKSPSWSKDSESEQSKKRSSSPRVFRDAKSVSKSPSGSKDSESTQSKSVSVEVKKTEELSQQVQSGSGSEMEEGELEPEPLPKFEPEPASKDAAAGSEIQQTSEDKQVHKQNEGCLTDADVVMEEKQMLSSEKEANTMEDVDSEVKDAENEVHELPKTQDVSIKETPFTETVIGTVDKDNDKKDANLNGDDTPKEETEKKTNKEKALLNEEEHEADKGVHSGDKSESNAEGSTVNAVAEVKRETMLESVTNNAKDKGKSVSVTPDVAHSSEDSLWVDRGSKDLAKCPVDAMEGPSTRGFELFSRSPVRKVEKSNRSVLKEENDDSLALGQLDLTLSLPNVLLPIGAQETTTQAPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTRNSVDYEQSVGKSVGSRPLFQGFDWQALSQGDPKPKEIPSGQRTSINGNGSLYQPQASWGILDTQTLKGQHSRALEGSSKMGSGLERQLSFHKQLSGQSRRHDDVRSPTQSVGSHDNGSNYSFEKKREVKERSSGSLHRTTSQKGQEQFLMGGLDFVKTIIARIVSEPVLPMSRKFHEMNAQYITRLKEGIRELMLNSDNHGQILAFQKVLMNRSDITLDVLVKCHRVQLEILVALKTGLTHYLHLDDNNISSSDLAQVFLSLKCRNVTCRSQLPVDECDCKVCVQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHTTGIKGTTEMQFHCIACDHPSEMFGFVKEVFQSFAKEWSAESLRKELEYVKRIFSASKDIRGSQLHEIADQMLPRLTKSNLPEVLRHIMSFLSDCDSSKLTMTTNFSGKEQVKENNGVAGPSQEAAWLKSIYSEKPPLLERPPNMLPRFDQNDKRTLVQELPMSSVQKDFGFDELESIVKIKHAEAKMFQSRADDARREAEGLKRIALAKSEKIEEEYTSRLAKLRFSETDELRKQKIEELQALERAHQEYLNMKRRMESEIKDLLSKMEATKMNLAM* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3570 1198 MobiDBLite consensus disorder prediction 27 57 - -
Psa7g3570 1198 Pfam PHD - plant homeodomain finger protein 849 971 IPR032881 -
Psa7g3570 1198 MobiDBLite consensus disorder prediction 211 255 - -
Psa7g3570 1198 CDD PHD_OBE1_like 879 937 - -
Psa7g3570 1198 MobiDBLite consensus disorder prediction 1 459 - -
Psa7g3570 1198 MobiDBLite consensus disorder prediction 123 181 - -
Psa7g3570 1198 Coils Coil 1106 1126 - -
Psa7g3570 1198 MobiDBLite consensus disorder prediction 361 410 - -
Psa7g3570 1198 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1198 IPR004082 -
Psa7g3570 1198 MobiDBLite consensus disorder prediction 676 728 - -
Psa7g3570 1198 MobiDBLite consensus disorder prediction 431 454 - -
Psa7g3570 1198 PANTHER PROTEIN OBERON 4 1 1198 - -
Psa7g3570 1198 Pfam Coiled-coil region of Oberon 1071 1186 IPR032535 -
Psa7g3570 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 759 781 IPR004082 -
Psa7g3570 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 798 813 IPR004082 -
Psa7g3570 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 813 828 IPR004082 -
Psa7g3570 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 840 861 IPR004082 -
Psa7g3570 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 886 906 IPR004082 -
Psa7g3570 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 958 977 IPR004082 -
Psa7g3570 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1093 1113 IPR004082 -
Psa7g3570 1198 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1132 1154 IPR004082 -
Psa7g3570 1198 Coils Coil 317 337 - -
Psa7g3570 1198 MobiDBLite consensus disorder prediction 190 210 - -
Psa7g3570 1198 MobiDBLite consensus disorder prediction 704 721 - -
Psa7g3570 1198 MobiDBLite consensus disorder prediction 311 346 - -
Psa7g3570 1198 Coils Coil 380 400 - -
Psa7g3570 1198 Coils Coil 1154 1195 - -
Psa7g3570 1198 MobiDBLite consensus disorder prediction 58 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3570 Psa-Chr7 291430907 291436548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3570 847 996 PHD Gene Family AT5G57380 25.000 2.06e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3570 - - mtr:MTR_4g039650 1771.13