Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3548 ATGGCAAGAACACCTTTTTACGACAAAAGTGGAATGAGGAAAGGGACTTGGAGTGCTGAGGAAGATAGGAAACTAATTGCTTATGTAACTAGATATGGTTGCTGGATCTGGCGCCAACTCCCTAAATTTGCAGGTCTTTCGAGATGTGGAAAAAGTTGTAGATTGAGGTGGATGAATTATTTAAGGCCTGATATCAAAAGAGGGAACTTCACTCAACAAGAAGAGGAATTGATCATCCAAATGCATAAAAATATGGGCAATAGATGGTCAGTCATTTCGGCTGAATTACCTGGAAGAACTGATAACGAAGTGAAGAACCATTGGCATACTTCACTTAAGAAGAGAGTTCAACAGATGAACACAGTCTCAAATGAAGACACCATTGTCGCTAAATCTCCAGCTAATTCCCATATCTCAGACATCACTGACTCATTATCTCCATTTTCATCATCCAGTGATGTATCTTCCACATCTGAAAATGATTTTGGTTTTCTAGATACGTTTATAGAATCCATGGATGAAAGCTTTTGGCTAGATGATCTTTCAAACACACCAAGTGGAATAGTGCAAAACAATACTAGTTGTGCTATCCAAAATCAAGAAAATACCACTAATGATGTTTTCTTAGTGTCACATAATCATATGTCCTATGAAAGTTTTGTTCTTGATAATGACTTTAGCAACTTTCTAAATGCTTACACAGAGTCTACAGTTGATAGTTTTTGGACTCACCCATATGAGGGTGACATGTCCTACGTTCTATAG 765 0.3752 MARTPFYDKSGMRKGTWSAEEDRKLIAYVTRYGCWIWRQLPKFAGLSRCGKSCRLRWMNYLRPDIKRGNFTQQEEELIIQMHKNMGNRWSVISAELPGRTDNEVKNHWHTSLKKRVQQMNTVSNEDTIVAKSPANSHISDITDSLSPFSSSSDVSSTSENDFGFLDTFIESMDESFWLDDLSNTPSGIVQNNTSCAIQNQENTTNDVFLVSHNHMSYESFVLDNDFSNFLNAYTESTVDSFWTHPYEGDMSYVL* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3548 254 Gene3D - 68 136 - -
Psa7g3548 254 CDD SANT 69 112 IPR001005 -
Psa7g3548 254 SMART sant 13 63 IPR001005 -
Psa7g3548 254 SMART sant 66 114 IPR001005 -
Psa7g3548 254 CDD SANT 16 61 IPR001005 -
Psa7g3548 254 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa7g3548 254 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa7g3548 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa7g3548 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa7g3548 254 Gene3D - 14 66 - -
Psa7g3548 254 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 217 - -
Psa7g3548 254 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 217 - -
Psa7g3548 254 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa7g3548 254 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Psa7g3548 254 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3548 Psa-Chr7 286326216 286327065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3548 1 177 MYB Transcription Factor Family AT1G06180 48.925 1.68e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa7g3548 Myb_DNA-binding 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3548 K09422 - gmx:100777107 288.5