Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3511 ATGGAATGTCCAAAAGAATCCCCTTATGGTTGTGATCTTCCTAGGTTTAGTGCCAAGGACTTCTTGGCAAGACTGAGAGAGGGATCCCTCATTATAGAAGGAGCTTGTGGTTACGGAGATCTTCACAAAGCTAGCTACGGAAAGCACAGTGTTGGATTAAGCACGACTTTGTTCAACAGAGGGACTACGTGTGGGGCTTGCTACGAGATCAGATGTGTTGACCATATCTTGTGGTGTGTGCTTGGAAGCCCTTCTGTAATTGTTACCGCCACTGATTTTTGTCCTCCTAATTGCGGTCTCTCAGTTGATTATGGTGGCTGGTGTAACTTTCCAAGACAACATTTTGAGTTGTCACAACCTGCATTTTCTGAAATTGCCAAAACAAAAGCCGATATTATTCCGGTTCAGTATAAAAGAGTGAAGTGTGAAAGAAGTGGTGGGATGAAGTTTACAATGAGTGGAAGTTCTCATTTCTATCAAGTTCTAATTACTAATGTGGGGCAAGAAGGTGAAGTGTTTACTGTGAAAGTGAAGGGATCTAGAACAGGATGGATACCAATGGCAAGGAATTGGGGAATGAATTGGCACTGCAATGTCAACCTACAACATCAGCCTTTGTCCTTTGAGGGCTACCCGGAAGACATACTGCGTCCTTTGAGGAATACCAACAAGAACAATTCTACAAGCACCATACAACCTGTTCCTCGCCAACCGTTTCGTTTTCGTTTCTACTCAATCGAAACTGCTCTTGAGTTTTCACAAAAAAGTCACTGCAGTAAAGAATAA 786 0.4275 MECPKESPYGCDLPRFSAKDFLARLREGSLIIEGACGYGDLHKASYGKHSVGLSTTLFNRGTTCGACYEIRCVDHILWCVLGSPSVIVTATDFCPPNCGLSVDYGGWCNFPRQHFELSQPAFSEIAKTKADIIPVQYKRVKCERSGGMKFTMSGSSHFYQVLITNVGQEGEVFTVKVKGSRTGWIPMARNWGMNWHCNVNLQHQPLSFEGYPEDILRPLRNTNKNNSTSTIQPVPRQPFRFRFYSIETALEFSQKSHCSKE* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3511 261 Gene3D - 146 215 IPR036749 -
Psa7g3511 261 PANTHER EXPANSIN-A15 24 209 IPR002963 GO:0009664
Psa7g3511 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 33 147 IPR007112 -
Psa7g3511 261 Pfam Lytic transglycolase 52 137 IPR009009 -
Psa7g3511 261 Gene3D - 17 143 IPR036908 -
Psa7g3511 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 233 IPR007117 -
Psa7g3511 261 PANTHER EXPANSIN-A20 24 209 - -
Psa7g3511 261 SUPERFAMILY PHL pollen allergen 144 209 IPR036749 -
Psa7g3511 261 Pfam Expansin C-terminal domain 149 208 IPR007117 -
Psa7g3511 261 SUPERFAMILY Barwin-like endoglucanases 32 165 IPR036908 -
Psa7g3511 261 PRINTS Expansin/Lol pI family signature 32 50 IPR007118 GO:0005576
Psa7g3511 261 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Psa7g3511 261 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Psa7g3511 261 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Psa7g3511 261 PRINTS Expansin signature 45 59 IPR002963 GO:0009664
Psa7g3511 261 PRINTS Expansin signature 72 83 IPR002963 GO:0009664
Psa7g3511 261 PRINTS Expansin signature 86 96 IPR002963 GO:0009664
Psa7g3511 261 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Psa7g3511 261 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Psa7g3511 261 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Psa7g3511 261 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Psa7g3511 261 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Psa7g3511 261 SMART dpbb_1 50 137 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3511 Psa-Chr7 280450613 280452051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3511 18 209 Expansin Gene Family AT4G38210 64.433 3.88e-94 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3511 - - lja:Lj0g3v0263569.1 352.443