Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3501 ATGACTCCAATTAACTTGGCGGGACAGTTTGGTGACACGACATACACCAAGGTTTTTGTCGGAGGTTTAGCTTGGGAAACTCAGAAAGAAACCATGAAGAAATATTTTGAACAGTTTGGTGAGATCTTGGAAGCTGTTGTCATCACTGATAAAGCTACCGGAAGATCCAAAGGCTATGGATTTGTTACTTTTCGTGAACCTGATGCTGCTATGAGAGCTTGTGTTGATGCTGCTCCTATAATTGATGGAAGAAGAGCTAATTGCAATCTTGCTTCTTTGGGTGTTCAAAGATCTAAGCCTTCAACACCAAAGCATGGAGGAGGAGGAAGGAACTTTAGGGTAATGGGTTCATTCCAGACAGGATTTGGAGGAGTGGGATCAGCTTTTCCTTCAGCTGCAACCTTCCCTCATTATGCTATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTTCTTACTCGCCAGATTATAGTTACCCTACGAGCTACTATGGTGTGTATGGTGGAGCAACAGCACAGTATCCAGTTTATGGAAGTGGTCCAACTGGAGGGATGATGACTGGTGGCGCAGCGGCCGCCGCAGCTTACTATCCATATCTTCAATACGGCGAAGGTACCGGTGGTGCAACGACCGGCGGCTACACTTCCGGGCAAGGTTATGGTGTTAACTACCCACCTCATGTGTTTCAATATTCTCCAATTGCTTCTACTGGTGGTTATGCTCAGCATTATGGAACTCCCATTTCTCTTGCTCCTTCTCCTGCTGCCTTGCCATCAGGCGTGACAATGTCTCTTCAAACTCCAATTCCTCATCGTTAG 822 0.4586 MTPINLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGVGSAFPSAATFPHYAIQQGIPYNVYGYSSYSPDYSYPTSYYGVYGGATAQYPVYGSGPTGGMMTGGAAAAAAYYPYLQYGEGTGGATTGGYTSGQGYGVNYPPHVFQYSPIASTGGYAQHYGTPISLAPSPAALPSGVTMSLQTPIPHR* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3501 273 SMART rrm1_1 17 89 IPR000504 GO:0003723
Psa7g3501 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Psa7g3501 273 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Psa7g3501 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Psa7g3501 273 PANTHER BOULE-RELATED 1 267 IPR037366 GO:0003729
Psa7g3501 273 PANTHER OS01G0876800 PROTEIN 1 267 - -
Psa7g3501 273 CDD RRM_RBM24_RBM38_like 16 91 - -
Psa7g3501 273 Gene3D - 7 112 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3501 Psa-Chr7 279057089 279064457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3501 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 1.14e-13 68.9