Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3500 ATGAGTTCTTCTAACGGCGGTGTGCCGCCGGGGTTTCGATTTCATCCGACCGATGAAGAACTACTTCATTACTACTTGAAGAAGAAGCTTTCGTTTCAAAAGTTTGATATGGATGTTATTAGAGAGGTGGATTTGAACAAGATGGAACCTTGGGACTTGCAAGAAAAATGTAAGATTGGGTCAACACCACAAAACGAGTGGTACTTTTTCAGTCACAAGGACAGAAAGTACCCAACAGGATCAAGGACTAATAGAGCAACAAATGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAATGCATTAGGAATACTTTCAAGAAAATTGGAATGAGAAAGACACTTGTGTTCTACAAAGGTAGAGCTCCTCATGGACAAAAGACTGATTGGATTATGCATGAATATCGCCTTGAAGACGGCAATGATCCTACCAATGAAGATGGATGGGTGGTGTGCAGGGTATTCAAGAAGAAGAACTTATTCAAGATAGGAAATGAAGGTGGATCCACACACAATCAAGATCAACAAATGAACAATATTTCCTCTACCAATCCACGGTCATTCATGCAAAGAGAAAACCAATACTTATTACATCAACAACAACAACATCAAAACCACCCTAGGAACCTAACCGGTTTCGAGCTTGAAAAAACCGAACTCGGTCTCCATTACCAACACTTGCAAAATTCTCAATACTCACTCTTCCATTCCCAACCCCAACCCCAACCCCAACCCCAACCTCTTCTTCATACTCAAAAGCCTCTCGAAATGAATTTCGACTACTCATACGCAACATCTTTACAGTCAGAACAACCTATAATAGTTAAACAACTTATGACAAACCCTAGAGACTGTGAAAGTGGAAGTGATGGTTTGAGATACCAAGTTTCTGAATCTGGTATTGAAGTTGGTTCATGTGAACCACATCAAGAAATTGGTGTAGGAAGGAGTGAAGGAATGAATGAATGGGGTATGCTTGATAGACTTGTGAATGAAGAGTCAACAAAAGGGGCCACTAGGTTTGAGGATGATAATCCTCATCATCAGATCAACCAGCTTTCTTTGAGGGGAGAGATGGATTTTTGGGGCTATGGAAAACAGTGA 1101 0.4078 MSSSNGGVPPGFRFHPTDEELLHYYLKKKLSFQKFDMDVIREVDLNKMEPWDLQEKCKIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNTFKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPTNEDGWVVCRVFKKKNLFKIGNEGGSTHNQDQQMNNISSTNPRSFMQRENQYLLHQQQQHQNHPRNLTGFELEKTELGLHYQHLQNSQYSLFHSQPQPQPQPQPLLHTQKPLEMNFDYSYATSLQSEQPIIVKQLMTNPRDCESGSDGLRYQVSESGIEVGSCEPHQEIGVGRSEGMNEWGMLDRLVNEESTKGATRFEDDNPHHQINQLSLRGEMDFWGYGKQ* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3500 366 PANTHER PROTEIN BEARSKIN2-LIKE 5 309 IPR033519 -
Psa7g3500 366 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 309 - -
Psa7g3500 366 SUPERFAMILY NAC domain 7 156 IPR036093 GO:0003677|GO:0006355
Psa7g3500 366 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Psa7g3500 366 Gene3D NAC domain 17 161 IPR036093 GO:0003677|GO:0006355
Psa7g3500 366 ProSiteProfiles NAC domain profile. 8 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3500 Psa-Chr7 277157574 277160061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3500 1 362 NAC Transcription Factor Family AT1G33280 55.256 7.70e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa7g3500 NAM 5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3500 - - gmx:100804181 576.63