Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3481 ATGGCTCGTGGAAAGGTTCAGCTGAAGCGAATTGAGAACCCAGTGCATAGACAAGTAACCTTCTGTAAACGCCGAGCGGGGCTTCTGAAGAAGGCTAAGGAGCTCTCCGTGCTTTGCGATGCTGAAATTGGCCTCGTCATTTTCTCCGCTCATGGAAAACTCTATGAACTCGCCACCAAAGGAACCATGCAAGGGGTAATAGAGAGGTACTTGAAGTTCACACATGGTACTCAATCTGAAGCTGTCACTGAACCATATCATTTGCTAATGGATGCTAAAGAGGAAACCAATGTGCTTAAACAAGAAATTGACACATTGCAAAAGGGTATGAGGTATTTGTTTGGAGGAGGATTAGGGACAATGGCAATGGATGAACTACAAGTTCTTGAGAAGAATCTTGAAATCTGGATGTATCATGTTCGCTCAATGAAGATGAACATTATGTCGCAAGAAATTCAAGCTTTGAGAGATAAGGAGGGAACACTTAAGGCAGCAAATACATATCTCCACGATTTGGTGTTGGAGAATACTTCTGTCACAAGCTTTGTTCCATTTGCTACTGATATTTCGTACCCATTGTTTCTACAAGATGGGATTTTTCAGCTCTAG 609 0.4236 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGVIERYLKFTHGTQSEAVTEPYHLLMDAKEETNVLKQEIDTLQKGMRYLFGGGLGTMAMDELQVLEKNLEIWMYHVRSMKMNIMSQEIQALRDKEGTLKAANTYLHDLVLENTSVTSFVPFATDISYPLFLQDGIFQL* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3481 202 Coils Coil 89 109 - -
Psa7g3481 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 - -
Psa7g3481 202 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Psa7g3481 202 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa7g3481 202 SUPERFAMILY SRF-like 3 91 IPR036879 GO:0003677|GO:0046983
Psa7g3481 202 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Psa7g3481 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa7g3481 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa7g3481 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa7g3481 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa7g3481 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa7g3481 202 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa7g3481 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Psa7g3481 202 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 201 - -
Psa7g3481 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3481 Psa-Chr7 275291250 275294182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3481 1 202 MADS-box Gene Family AT1G71692 59.155 6.92e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa7g3481 K-box 3.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3481 - - gmx:100815314 320.857