Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3480 ATGGACATGAACTCGAATCATACTCCTGTTCTCACGGATACCGCTCCGATAACAAATTCTAGGCTACACGTGCATTCCAGTTTGTTGCCTTATTCCCATACCGGTGCAACCTTTTCACATGGCATGCTATTGAATATCCCAAGGAAGAAGACAGGAATTCTCGAAGACGTTCTTTCTTGCAATTGGTTGGATGCCATGAAATCATCTTCACCTCCACCGAAGAATATAACAAAGGATGTTAATCACGGGCTTGCATCATCTGAAACCGATCCTTATTTTAACTGGCTGCTGAAATATCCTTCAGCGCTTTCATCTTTCGATCAAATTACGAACTATGCAAAAGGCAAAAGAATTGCATTGTTTTTGGACTATGATGGAACTCTTTCACCAATTGTGGATAACCCTGACTGTGCTTTCATGTCGGAGAATATGCGCGCTGCTGTTAAAAAGGTGGCCGAGTATTTTCCAACCGCTATAATTAGTGGAAGAAGTCGTGACAAGGTGCATGAATTTGTAGGACTAACCGAACTCTATTATGCTGGTAGTCATGGAATGGACATAATTGGCCCTGTTAGACAATCTCTATCTGTATCGCATAACAAGCAGGGAAAAAAGGTTAATTTATTCCAACCTGCTGCTGAATTCCTTCCTATGATTAATGAGGTTATGAAGTCTCTCATTGAGTGTACAAAGGACATCGTAGGATCAAAAATTGAGAACAATAAATTTTGTGTTTCTGTTCATTACCGCAATGTAGATGAAAAGAGTTGGGATTTGGTGGGGCGACGAGTTAATGATGTTCTCAAGGGCTTTCCACGTTTGCGGTTAACTCACGGTCGCAAGGTTTTAGAGGTCCGGCCTGTGATTAACTGGGATAAGGGAAAAGCCGTCACATTTTTACTCGAGTCACTTGGACTTAACAATTGTGACGACGTGCTTCCTATATATATTGGCGATGATCGAACGGATGAAGATGCATTTAAGGTTTTGAGAGAGGGAAATAAAGGTTATGGGATTTTAGTCTCTTCCGCACCAAAGGAAAGCATTGCAATTTACTCTCTTCGTGATCCAACAGAGGTGATGGAATTTCTGAAGTCGCTTGTGATTTGGAAGTCAAGTCCCATAAAAAGCCATATATAG 1140 0.4123 MDMNSNHTPVLTDTAPITNSRLHVHSSLLPYSHTGATFSHGMLLNIPRKKTGILEDVLSCNWLDAMKSSSPPPKNITKDVNHGLASSETDPYFNWLLKYPSALSSFDQITNYAKGKRIALFLDYDGTLSPIVDNPDCAFMSENMRAAVKKVAEYFPTAIISGRSRDKVHEFVGLTELYYAGSHGMDIIGPVRQSLSVSHNKQGKKVNLFQPAAEFLPMINEVMKSLIECTKDIVGSKIENNKFCVSVHYRNVDEKSWDLVGRRVNDVLKGFPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESIAIYSLRDPTEVMEFLKSLVIWKSSPIKSHI* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3480 379 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 373 IPR044651 GO:0004805|GO:0005992
Psa7g3480 379 Gene3D - 118 217 IPR023214 -
Psa7g3480 379 Gene3D - 218 377 IPR023214 -
Psa7g3480 379 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 373 - -
Psa7g3480 379 Pfam Trehalose-phosphatase 121 357 IPR003337 GO:0003824|GO:0005992
Psa7g3480 379 TIGRFAM T6PP: trehalose-phosphatase 115 368 IPR003337 GO:0003824|GO:0005992
Psa7g3480 379 CDD HAD_TPP 119 362 - -
Psa7g3480 379 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 120 331 IPR006379 -
Psa7g3480 379 SUPERFAMILY HAD-like 119 369 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3480 Psa-Chr7 275181171 275185840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3480 112 367 Trehalose Biosynthesis Gene Families AT1G70290 26.740 1.73e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3480 K01087 - gmx:100819495 659.062