Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3471 ATGGGTAGGGGGAAAATTGAGATTAAAAGAATTGAAAATTCTAATAGCAGACAAGTTACATTTTCAAAGAGAAGAACTGGCTTGTTGAAGAAGGCTCAGGAGCTTGCTATTCTTTGTGATGCTGAGGTTGCTGTTATCATTTTCTCTAACACAGGCAAACTTTTTGAGTTTTCTAGTTCTGGTATGAAGAGAACACTTTCAAGATACAACAAATGCACGGATTCTTCAGAGAGTGCATCAGTGGAATATAAAGCTGAGTGTTTTCTTCAGAAGGAAGATTCTAAGATGGTGGAGATTCTTAAAGATGAAGTTGCAAAACTAGAAACAAATCAATTACGGCTGTTGGGAAAGGACTTAGCAGGATTGGGATTAAAGGAACTGCAACTTCTAGAGCAGCAAATTAACGAAGCGTTATCATCCGTGAAGGAGAAGAAGGAAGAATTACTTATGAAGCAACTGGAGCAGTCTAGGATACAGGAGCAGAAGGCTATGCTGGAGAATGAAACTTTGCGCAGACAGGTTGAGGAGCTTCGGTGCTTGTTTCCGATTACTGAACATGTGATTCCAAATTATCTTCAGTATCACCATCTGGAAAGAAATAATTCCTTTGTAGATAATGGTGTTAAATGTCCCAGCTTGGCAAGAAGCTGCTCAAACGACAGAGGAGATTCAGACACCACATTGCATTTAGGGTTACCAACTGATGTTCATCACAAGAGGAAGAGTCCTGAGAAAAAAACCTTTTCGAATGATTCATAG 759 0.3939 MGRGKIEIKRIENSNSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSESASVEYKAECFLQKEDSKMVEILKDEVAKLETNQLRLLGKDLAGLGLKELQLLEQQINEALSSVKEKKEELLMKQLEQSRIQEQKAMLENETLRRQVEELRCLFPITEHVIPNYLQYHHLERNNSFVDNGVKCPSLARSCSNDRGDSDTTLHLGLPTDVHHKRKSPEKKTFSNDS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3471 252 Coils Coil 153 180 - -
Psa7g3471 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa7g3471 252 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Psa7g3471 252 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Psa7g3471 252 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Psa7g3471 252 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 236 - -
Psa7g3471 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa7g3471 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa7g3471 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa7g3471 252 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa7g3471 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa7g3471 252 PANTHER MADS BOX PROTEIN 1 236 - -
Psa7g3471 252 Pfam K-box region 95 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa7g3471 252 Coils Coil 124 151 - -
Psa7g3471 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa7g3471 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3471 Psa-Chr7 274321577 274327007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3471 1 252 MADS-box Gene Family AT5G13790 55.336 7.25e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa7g3471 K-box 2.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3471 - - rcu:8259342 325.865