Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3322 ATGAAATTCTACAACCGCAGGTTGCTCCTACAGGACGAGGATGTTCCAATCTCAACACCCCCTCAAATCCAACCCAGCAACTCCAAAACCGCATCCTCACCGTCCCTTCCCACCATTCCATCTTCCAGAGCAATCACAAGTCCTTTACAGTTACCACTACCGTTAAACCCGATTTTCTCTTCCAAAGTAGCTTACTCCTGCCTCCTCCTCTTCTCCACCTTTTTCTTCGCTGCCTTCGTCATCTTATCGATCCGTGAAGTCTCATCCCGGCGGCGGCGTAGTCTCCCTCCGCGACGGGGGTTGGATGCCGCCTCCGTGAAGGCTCTGCCGGTGTGTTCGTACGAGGAGGATACGAAACAACCGGACTGTGCAATTTGTTTGGAGGAGTTTGAAGACAGTGATGAAGTGAAGATGATTCCGTACTGTAGGCACGTGTTTCATCCTGAATGTATTGACGCGTGGCTTTCTGCACACGTGACTTGTCCTATTTGCAGGTGCGTTATTAAGGTGTGCGGTGGGAATGTGGATCAAGATGATGGAAGATCAACGGTGGATGATGGAAGTTGA 567 0.5062 MKFYNRRLLLQDEDVPISTPPQIQPSNSKTASSPSLPTIPSSRAITSPLQLPLPLNPIFSSKVAYSCLLLFSTFFFAAFVILSIREVSSRRRRSLPPRRGLDAASVKALPVCSYEEDTKQPDCAICLEEFEDSDEVKMIPYCRHVFHPECIDAWLSAHVTCPICRCVIKVCGGNVDQDDGRSTVDDGS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3322 188 CDD RING-H2_PA-TM-RING 122 165 - -
Psa7g3322 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 82 168 - -
Psa7g3322 188 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Psa7g3322 188 SMART ringv_2 122 165 IPR011016 GO:0008270
Psa7g3322 188 Pfam Ring finger domain 122 165 IPR001841 -
Psa7g3322 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 170 IPR013083 -
Psa7g3322 188 SUPERFAMILY RING/U-box 112 171 - -
Psa7g3322 188 SMART ring_2 123 164 IPR001841 -
Psa7g3322 188 PANTHER RING FINGER DOMAIN-CONTAINING 82 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3322 Psa-Chr7 252839706 252841332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3322 98 165 C3H Transcription Factor Family AT2G27940 55.714 4.53e-24 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3322 - K10664 mtr:MTR_4g056590 230.72