Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3312 ATGGAGCAGCCTGTTGCGAGATCGAGGGGTCGTCCGAGGAAACGGAGAAAGGAGGATGAGAAGGACGGTAAATCTGTTCCCGACGCTAAGAGGCAAGCGTTGGAGAGGAAACCAGTTGCATTGGTTGGAAGGTACGTGCTAAAGAAGTTCCCTAGAAATGGTGTTTTTCTAGGGAAAGTAGTGTATTATGAATGCGGTCTTTATAGAGTCATTTATGAAGACGGGGATTTTGAGGATTTAGAGAGTGCAGAAATCCGTCCTATTCTTATAAGTGATGCTGTGGATTTTGACGTTGGTCTGATAAAAAGGAGGACCAAATTGGAGAAGTTAGTGTTGCAGAATAGGGCTAAGGCTGCAGATGTGGCTGATATGGCTTCACCAAAATCCGTGAAAGAGGAATCTGCTGTTGATGTGACTGGTCCAAGTGAATTGGATGGGGGATTATCAGTTGAAAATGATAATGATGAAGATGATGGGGCTGATGATGATTTGTCCAGTGTCTCTGTTTCTGATGTTGAGACAGCGCCTTTGCCACCGCCGTTGTTGTTGCCACCTTCATCTGGAACTATTGGTGTTCCGGAGCTGAGTGTCTCCCATCTTTTTTCTGTCTATGGATTTTTAAGATCATTCAGCACTCGATTGTTTCTTCATCCCTTTACTTTGGATGATTTTGTTGGTTCTCTTAAATGTCAATTCTCTAATACTTTGTTTGATGCTATTCACTTTTCTCTGATGCGGGTGTTGAGGCGTCATCTTGAAACCCTGTCGCCTGAGGGATCTGAGCTTGCATCACAATGCCTTAGGTGCTACGATTGGAACTTGCTCGATACGTTGACTTGGCCTGTTTTTGTCATTCTGTATTTGTTGGTTAATGGGTTCACGAAAGGACCCGAATGGAAAGGATTTTACGATGAGGTTTTTAGTGGCGAATATTATTTGTTGCCTGTAAGTAGGAAGTTAGTGATACTGCAAATTCTTTGTGATGATGTTTTGGAATCTGATGAGCTGAAAACTGAAATGAACATGCGAAAGGAGTCAGAGGTCGGGATGGATTATGATGCAGAAGATATCCTTCCTGCAGAAACAGGCCCCAGAAAAGTCCATCCAAGATATGCCAGGACCTCTTTTTGTGAGGATAAAGAAGCTATAAAATTGGTTTCAGCATCAATTGCTGTAAACCAACCTTGTAACTCTATTTCACATTGCAGAGAAATAGAAAGCACTGGGGATGGGGATGCTGATAGAAACGGAGATGATTGCCGCCTCTGTGGTATGGATGGAACCCTTCTTTGCTGTGATGGATGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTAATGAAAATGTTTATACCAGAAGGACCATGGTATTGTCCAGAGTGCAAAATCAACATGGCTGGGCCCACAATTGCAAAGGGAACCTCACTTAGAGGGGCTGAAATATTTGGAAAGGATTTGTATGGGCAGCTCTTCATGGGCACATGCGACCACTTACTCGTGCTTAACATTGACAACAATGAAGTTTGTCTTAGATATTACAATCAGAAAGACATCCCTAAAGTTGTCCAAGTGCTTTATGAATCCATGCTGCACAGGCCAATGTACTATGATATTTGCATGGCTGTGTTACAATATTGGAATGTTGCAGAAAAGTTCTTACCCCTTCCTGCTTCAACTGAAACAAATATAAAGGATGAGTCACAATTTCCCGCTCCTTTACTTCCTCCTCCAAGCGAAGAGAACCATAAGCCTGTTAGTTTGGTCCAGGGAGAGAACTCTCCAACCACTGCAAGTTTGATTCACAATAGTAATATGGTGTCTTCTCTTGATGCATTAGAAGTTATAACTCAAAGTCCTGCTCTTGATAGCAGCGGCATTGCTAGAAGTGAAGAGGGCCTTACTATGAATAAGAACCTTGGTGAGGAAACTAGAATGGAGGCAATAATTTCAGCTGGTTCTGTTAGTCATCAGTCCAACCTGAACTTTCAGAATTCTGTCAATATGTCAACTGCTATAGATGCCACTAAGTGCTCTTTGATAAACAGTCAATTAAGTAATTGTGTCCATGCAAATGATATGGGGTTGCCTTTGAATTTTTCTTCGCAAAACAAAGAAAGTGCCCAATTAGGTTTTGGAAAGTCTGAATACAATGCAAATGCTGATTTTTGTTACATGGGTTTCTTATATAAACCCATGTCATACATAAATTACTATATGCATGGTGATTTTTCTGCATCAGCAGCTTCCAAGTTTGTCATCGTTTCTTCAGAGGAATCTAGGTCAGAGGGTCTTGTGTCAGACAGCCAGAAGAAAACTGCATCAGCATATACTTATATGCAAGCAAAAGCATTCTCACTAGCAGCTTCACGTTTCTTTTGGCCTAGTTCTGAAAAAAAGCTTGTGGAGGTTCCTAGAGAGAGGTGTGGTTGGTGCATTTCCTGTAAAGCCCCTGTTGCTAGCAAGAGAGGGTGCATGTTAAATCATGCTCTTATAAGTGCAACGAAAAGTGCTGTGAAAATCCTTGCTACTTTTTCTCCTATAAGGAGTGGAGAGGGAATTCTTCCTAGCACCATTGCGACCTACCTTTTATATATGGAGAATTGTTTACATGGTCTAGTAGTTGGCCCCTTCACAAATTCAAGCTTTCGAAAGAACTGGCGTAAGCAAGTGGAACATGCCACAACATTTAGTGCTATCAAGCCACTTCTACTCAAACTTGAGGAGAACATTCGAGTCGTTGCTTTTTGTGGCGACTGGGTTAAGCTGATGGATGATTGGTTGGTCGAATTTCCCACTATACAAAGTGCCACATCTACTCTTGGAACAACTCAGAAACGTGCACCAAGTGGGAGGCGTAATAAAAAGAAGTCATCTATTGATGAAGCTACAGTTAATGTTTCTAAGGAAGGTATGTGGTGGCGTGGTGGGAAAGTTACCAAGTATATTTTTCAGAGTGCAGCTTTGACGAAATCCATGGTCAGAAAAGCAGCCCGCCAAGGTGGTTCTAGGAAAATTTCTGGTGTTGTATATGCCGATGGCTCTGAAATTCCCAAAAGAAGTAGACAGCTTGTTTGGAGAGCCGCAGTTCAAATGAGTAGGAATGCTTCACAGCTGGCACTCCAGGTCAGATGTCTAGATTCTTATCTTAGATGGAGTGATCTGATTCGTCCAGAGCAGAACATACAGGAAGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCCGAAATGCAAATATTTGTGACAAAAAACTTGTGGAGGGAAAAGTTTGTTATGGAATAGCTTTTGGGAGCCAAAAGCATCTTCCTAATCGGGTGATGAAAAGTGTTGTTGAAAAAGAGCAATTCCCATTGGGAAAAGAAAAGTATTGGTTTTCTGAAACTCGCATTCCTTTATATTTGGTAAAAGAGTATGAAGAAGGTAATGAAAAGGTTCCATGTGAAGAGCAGTATAGTGGTGCATCTCAGTTGCATAGAAGGCGGTTGAAAGGTACCTGCAAAGGCTGCAATGACATATTCTTTTACCTCGTTTGCAGGAGAGATAACTTGGCATTCTCGTGCTCTTCATGTCAGATGGGCATTTCAATTCGGAATGCTCACAAGTGTAATGCATGTCAAGGTTATTGTCATGAGGACTGTTCCATAAGCTCAGTCTTGAGACTCTCTACAAATGGGAGAGTTGAGTGCTTGACCACATGCAAACGATGTCACCATGCCAAGTTACTTGCTCCAAATGTAACTAGCAATGAATCTCCAACCAGTCCCTTAATCTTACAGAGACAGGAAAACAGCAGTGGGACTGGGATTATTTTTAAGGGACCAAGGCCAAAGGTCAGTCATTCTGATGTGAAACAAGTCAATTCCATGTCAGGTTTGAAAGGATCTAAGCGTAAATCTCATGATCAAACTTCGACTTCTACCAAGAAAAAGAATAGTCATTCTGACACAAAACAAGCCGTGGCTGATTCTACTTTGGCATCAAGCAACCGTCGCAACAATAATTGTTCCTGGGGTATAATATGGAAAAAGAGAAATAATGAAGATACAAACATTGATTTTACGATAAAAAACATATTATTAAAGGGAGGATCAAACATACCTGATTTGTCTCCTGTTTGTCACTTATGCAAAAATGACTATAGGTCAGATCTAATGTATATTTGCTGCGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTTCGAATGTGTTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGTCTGTCCTTACCCCGATTCAAAGCCAAAGTCAGAAGTTAAGAAATCTCGCAGAAGGGCTTCAAAGAAACAACATTCTGGACCTGATTCTGATTCTGGTGCATTTAATGATATGAGAGAGTCTGAACCTGCTACTCCTGTGTTTCCTGTGGAGAATGATCCTTTACTTTTCTCTCTTGCAAATGTTGAGCTGATTACAGAACCTAATAAATTAGATTCGGATGTTGAGTGGAACACTCTCTCTATGCCAGGGCCTCAGAAATTACCCGTGAGAAGGCATGTTAAGCATGAGGGGGGTGATGATGGTTCTGTTTCAGGAATACCTTTTCATGATGAATTTTCAACATACAGTGAAGCAGGTAATATGTCCAATCCTGCAGATTCGATATTACCTTTGGAATACGACTCTGCTGTTTTTGACAGCAATCTGCTGAGCAACTCTGAGTTTGTAAATAACGATGACAACATGTTTAACGATAATACCATCTTTGATGTAAATGACCTGCTGCGCTCAGATGACAGCCAGATTGGTGAAGGTGATGTGACTGGGGAATTATTGGGATACAACATGGACCAGAATGATGAAGGTGATGTGCCTGGGGAATTATTGGGATACAACATGGAGAATTCTGTTCCTGAAGAATATGGAGATGGCAATTTTTTCTGTTCTAAATGTTTACAAACTGAACCTGGCCCTGAGTTTTTTTGTGGGACTTGTGGGGTTTTGTATCATGGCCATTGTTTGCCTTGGCCTGAATCAGCTTCCGATCCCTTACATTGGACGTGTCAGACTTGCCGGGATTGGCAATAA 5082 0.4154 MEQPVARSRGRPRKRRKEDEKDGKSVPDAKRQALERKPVALVGRYVLKKFPRNGVFLGKVVYYECGLYRVIYEDGDFEDLESAEIRPILISDAVDFDVGLIKRRTKLEKLVLQNRAKAADVADMASPKSVKEESAVDVTGPSELDGGLSVENDNDEDDGADDDLSSVSVSDVETAPLPPPLLLPPSSGTIGVPELSVSHLFSVYGFLRSFSTRLFLHPFTLDDFVGSLKCQFSNTLFDAIHFSLMRVLRRHLETLSPEGSELASQCLRCYDWNLLDTLTWPVFVILYLLVNGFTKGPEWKGFYDEVFSGEYYLLPVSRKLVILQILCDDVLESDELKTEMNMRKESEVGMDYDAEDILPAETGPRKVHPRYARTSFCEDKEAIKLVSASIAVNQPCNSISHCREIESTGDGDADRNGDDCRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINMAGPTIAKGTSLRGAEIFGKDLYGQLFMGTCDHLLVLNIDNNEVCLRYYNQKDIPKVVQVLYESMLHRPMYYDICMAVLQYWNVAEKFLPLPASTETNIKDESQFPAPLLPPPSEENHKPVSLVQGENSPTTASLIHNSNMVSSLDALEVITQSPALDSSGIARSEEGLTMNKNLGEETRMEAIISAGSVSHQSNLNFQNSVNMSTAIDATKCSLINSQLSNCVHANDMGLPLNFSSQNKESAQLGFGKSEYNANADFCYMGFLYKPMSYINYYMHGDFSASAASKFVIVSSEESRSEGLVSDSQKKTASAYTYMQAKAFSLAASRFFWPSSEKKLVEVPRERCGWCISCKAPVASKRGCMLNHALISATKSAVKILATFSPIRSGEGILPSTIATYLLYMENCLHGLVVGPFTNSSFRKNWRKQVEHATTFSAIKPLLLKLEENIRVVAFCGDWVKLMDDWLVEFPTIQSATSTLGTTQKRAPSGRRNKKKSSIDEATVNVSKEGMWWRGGKVTKYIFQSAALTKSMVRKAARQGGSRKISGVVYADGSEIPKRSRQLVWRAAVQMSRNASQLALQVRCLDSYLRWSDLIRPEQNIQEGKGQETEASAFRNANICDKKLVEGKVCYGIAFGSQKHLPNRVMKSVVEKEQFPLGKEKYWFSETRIPLYLVKEYEEGNEKVPCEEQYSGASQLHRRRLKGTCKGCNDIFFYLVCRRDNLAFSCSSCQMGISIRNAHKCNACQGYCHEDCSISSVLRLSTNGRVECLTTCKRCHHAKLLAPNVTSNESPTSPLILQRQENSSGTGIIFKGPRPKVSHSDVKQVNSMSGLKGSKRKSHDQTSTSTKKKNSHSDTKQAVADSTLASSNRRNNNCSWGIIWKKRNNEDTNIDFTIKNILLKGGSNIPDLSPVCHLCKNDYRSDLMYICCETCQNWYHAEAVELEESKISNVLGFKCCKCRRIKSPVCPYPDSKPKSEVKKSRRRASKKQHSGPDSDSGAFNDMRESEPATPVFPVENDPLLFSLANVELITEPNKLDSDVEWNTLSMPGPQKLPVRRHVKHEGGDDGSVSGIPFHDEFSTYSEAGNMSNPADSILPLEYDSAVFDSNLLSNSEFVNNDDNMFNDNTIFDVNDLLRSDDSQIGEGDVTGELLGYNMDQNDEGDVPGELLGYNMENSVPEEYGDGNFFCSKCLQTEPGPEFFCGTCGVLYHGHCLPWPESASDPLHWTCQTCRDWQ* 1694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3312 1693 ProSitePatterns Zinc finger PHD-type signature. 420 461 IPR019786 -
Psa7g3312 1693 MobiDBLite consensus disorder prediction 1267 1326 - -
Psa7g3312 1693 Pfam PHD-finger 420 462 IPR019787 -
Psa7g3312 1693 MobiDBLite consensus disorder prediction 149 164 - -
Psa7g3312 1693 Pfam DDT domain 196 251 IPR018501 -
Psa7g3312 1693 MobiDBLite consensus disorder prediction 123 169 - -
Psa7g3312 1693 CDD PHD2_CHD_II 420 461 - -
Psa7g3312 1693 MobiDBLite consensus disorder prediction 1432 1459 - -
Psa7g3312 1693 SUPERFAMILY FYVE/PHD zinc finger 1367 1426 IPR011011 -
Psa7g3312 1693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1629 1693 IPR013083 -
Psa7g3312 1693 CDD PHD_SF 1645 1689 - -
Psa7g3312 1693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1367 1425 IPR013083 -
Psa7g3312 1693 MobiDBLite consensus disorder prediction 1 30 - -
Psa7g3312 1693 SUPERFAMILY FYVE/PHD zinc finger 1632 1691 IPR011011 -
Psa7g3312 1693 MobiDBLite consensus disorder prediction 1293 1315 - -
Psa7g3312 1693 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1689 - -
Psa7g3312 1693 SUPERFAMILY FYVE/PHD zinc finger 409 467 IPR011011 -
Psa7g3312 1693 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 299 341 IPR028942 -
Psa7g3312 1693 ProSiteProfiles DDT domain profile. 194 254 IPR018501 -
Psa7g3312 1693 SMART PHD_3 419 462 IPR001965 -
Psa7g3312 1693 SMART PHD_3 1645 1690 IPR001965 -
Psa7g3312 1693 SMART PHD_3 1371 1419 IPR001965 -
Psa7g3312 1693 MobiDBLite consensus disorder prediction 13 30 - -
Psa7g3312 1693 ProSiteProfiles Zinc finger PHD-type profile. 417 464 IPR019787 -
Psa7g3312 1693 MobiDBLite consensus disorder prediction 940 961 - -
Psa7g3312 1693 PANTHER PHD FINGER FAMILY PROTEIN 1 1689 - -
Psa7g3312 1693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 466 IPR013083 -
Psa7g3312 1693 SMART testlast3 194 254 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3312 Psa-Chr7 251913527 251922351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3312 284 563 EF-hand Containing Proteins AT5G22760 49.135 7.86e-76 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Psa7g3312 DDT 8.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3312 - - mtr:MTR_4g055920 2133.99