Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3308 ATGGGGGATCAAACCCTAAACCTACCGGTTACTCTATCACTAAGTTCAACCCAAAACGGATCAGAAACCACCAACAATCCCGTAGAAGTTGTCGGGGTTGATGCTGGTTCCGATACCGGAGAAAAGTCCGATCCTAAAGTTCTAAGTTCGGACTCCGTTCGGGTGAAAAGGGCTAGAGGCAGGCCTAGAAAATGCGAGGTTGATGGAAACAAGTCGTCTCTGATGTCTGCGTCTGTGTCGGTGTCTGAAACATCCGAGTCTATTATTCAGCCTTTTGGAAATGAAGTGAAACGTGGAAGAGGGCGTCCTCGTGGTTCTGGAAAACTTCAGATTTTGGCTTCTATGGGTGGATGTGTTGCTGAAACTGCTGGAGGAAGCATGACACCTTATGTGCTGACTGTGAACCCCGGAGAGGATGTGGTTGGAAAAATATTTACATTTTTTCAGAAAGGTCCTAGAGGAGCTGTTTGCATTCTTTCTGCTGCTGGTTCTGTATCAACTGTCATCCTTCGGCAACCCGGTGTTTCCGGTGGTTCTTTAAGATATGAGGGTCACTTTCAGATTTTATCGTTGAGTGGATCATGCACTTTCACTAGTGGTGCTGCTGGTGGTGCCGAGAGGAAAATTGGCATGTTGACTGTTTCATTGGCTAAGCCTGATGGAGTGGTTTTTGGAGGTGGTGTTGAGAGTTCATTGATAGCTGCTACTCCTATTCAACTTATTCTGGCAACATTCAAGCAAAACATAAGCAACCAAATAAAGAGAAAGTACTCATCTCCAACTTCAACAACAGCTCCAAACATGGTGACTAATCAAGATTCATCGAGCGATAATAACTTGAAAGTTCAAGTTCCGAGGTTAACCGTAGAAGGAGAACCCAGCTGCCTAAGAGCAACAGCAACAAAAAATACTAATGGTGTAGCAGAAAGAGATGATAATGTGAAAGGTGAAAGAACAACTAACGGTGTTTCAGAGTCAGAAAATATCACTAATGTTCAATCTGATTCTGTTGGGGATGGTGTTATTGACCTTGAAAGCCAGACACTGGAGCATGTTGATGCCAACAGTGTACCTTAA 1077 0.441 MGDQTLNLPVTLSLSSTQNGSETTNNPVEVVGVDAGSDTGEKSDPKVLSSDSVRVKRARGRPRKCEVDGNKSSLMSASVSVSETSESIIQPFGNEVKRGRGRPRGSGKLQILASMGGCVAETAGGSMTPYVLTVNPGEDVVGKIFTFFQKGPRGAVCILSAAGSVSTVILRQPGVSGGSLRYEGHFQILSLSGSCTFTSGAAGGAERKIGMLTVSLAKPDGVVFGGGVESSLIAATPIQLILATFKQNISNQIKRKYSSPTSTTAPNMVTNQDSSSDNNLKVQVPRLTVEGEPSCLRATATKNTNGVAERDDNVKGERTTNGVSESENITNVQSDSVGDGVIDLESQTLEHVDANSVP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3308 358 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 249 - -
Psa7g3308 358 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 12 351 IPR039605 GO:0003680
Psa7g3308 358 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 246 IPR005175 -
Psa7g3308 358 CDD DUF296 128 245 IPR005175 -
Psa7g3308 358 Gene3D - 129 267 - -
Psa7g3308 358 ProSiteProfiles PPC domain profile profile. 124 271 IPR005175 -
Psa7g3308 358 PANTHER DUF296 DOMAIN PROTEIN 12 351 - -
Psa7g3308 358 MobiDBLite consensus disorder prediction 305 325 - -
Psa7g3308 358 MobiDBLite consensus disorder prediction 256 278 - -
Psa7g3308 358 SMART AT_hook_2 56 68 IPR017956 GO:0003677
Psa7g3308 358 SMART AT_hook_2 97 109 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3308 Psa-Chr7 251594880 251598545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3308 55 245 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 45.550 4.55e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3308 - - mtr:MTR_4g055833 401.364