Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3299 ATGGAGCAAGATCAAATTAGTTTAAACTCTCTACCTGCTTTTCTGTCTAAGACTTATAAGATGGTCAATGATCCTACAACCAATGCTATTATTTCATGGAGTTCTACAAATAGGAGTTTCATTGTTTGGGACAAACTTGAATTTTCGAAGGATTTGTTGCCTAGATTTTTTAAGCACAACAATTTCTCGAGTTTTATTAGACAGCTTAACACTTATGGATTTAGAAAGATTAGTCAAAAACAATGGGAATTCTCAAATGATGATTTTGTAAGAGATCAACCAGATCTCATGAAAAATATCTACAAGCGCAGACCTGTTTTTAGCCATTCTGCGTCTTCTGGTGCTGTTGTTGCTGCTGCTCCTCCGTTAACAGAATCAGAGCGGCAGAATCTCAAGGCTCAGATAGAAAAATTTAGAGATGAAAAAGAACAACTACTTATGGAACGTCTGAGGAAGCAAGAGGAGTGGAATCGGAATGAGATGCAGGTGCATTATTCAAAGGATCGTTTGCAACAATTGGAACTGAATAACCAAAGCTTGCTCTCTTCTGTTGGTCAAGTGCTGCAGAAATCCGTAGAAGAGGCAAATCTCCTGCCATCTACGGTAAACACGGGGACAAAACGAAGTTATTTGGGAAATTTTCCCTATAACAATTTAGCAAGCATTGAACTTCCGAAGGAAACTTCGGAAGGGTTAACTAGAGCAAACGCGGAGAGTGCATGCGTTCTCGGTACAAACATGGAAATATTAGATCAGCTGGACTCATCATTGACATTTTGGGAGAATCTTGTAAAGGAAGTTACCGACACGTCTTATGAAACTGGTTCAAACTTGGGCTTTAATGATTCTTTGAATCGTGCACAACTAGATTTTGAAGTTCAGCCCGAGTCATCAGAATACAGAATGAACTCTCTATTAGATTTAACCGTTGTTCCCGATCCTGATCTAGTTGAACTCGAGTTAGATGATATCTTTATTTATGATCCTGATGTACCAGAGCCAGCTGTTGTCGCGGTTCCTGATCCAGTTGCACCTGAGACGGTTGTTACCGTTGTTCCTGACTCGGCTACACCGAAAGAACAACGTCTCGGAACAATCCCGGGTACTAATGAATTTAATTCACCATTTTGGCAAAGATACTTGGTGGAAGATCCTTATGAGTATGAATCAGAAAATCCCCGTGAAATTGCCAAATATTTCTGGAGCATCAGGGATCGAAAAAAACCTCAAATTTATCAATCAGACAAAAAGCTTAGTGAAAAATGA 1266 0.3942 MEQDQISLNSLPAFLSKTYKMVNDPTTNAIISWSSTNRSFIVWDKLEFSKDLLPRFFKHNNFSSFIRQLNTYGFRKISQKQWEFSNDDFVRDQPDLMKNIYKRRPVFSHSASSGAVVAAAPPLTESERQNLKAQIEKFRDEKEQLLMERLRKQEEWNRNEMQVHYSKDRLQQLELNNQSLLSSVGQVLQKSVEEANLLPSTVNTGTKRSYLGNFPYNNLASIELPKETSEGLTRANAESACVLGTNMEILDQLDSSLTFWENLVKEVTDTSYETGSNLGFNDSLNRAQLDFEVQPESSEYRMNSLLDLTVVPDPDLVELELDDIFIYDPDVPEPAVVAVPDPVAPETVVTVVPDSATPKEQRLGTIPGTNEFNSPFWQRYLVEDPYEYESENPREIAKYFWSIRDRKKPQIYQSDKKLSEK* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3299 421 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g3299 421 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 394 IPR027725 -
Psa7g3299 421 Coils Coil 128 155 - -
Psa7g3299 421 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Psa7g3299 421 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 394 - -
Psa7g3299 421 Pfam HSF-type DNA-binding 14 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g3299 421 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g3299 421 Gene3D - 7 104 IPR036388 -
Psa7g3299 421 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g3299 421 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g3299 421 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3299 Psa-Chr7 249904007 249905641 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3299 6 281 HSF AT4G18880 45.683 2.61e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa7g3299 HSF_DNA-bind 4.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3299 K09419 - gmx:100798004 311.612