LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa7g3299	ATGGAGCAAGATCAAATTAGTTTAAACTCTCTACCTGCTTTTCTGTCTAAGACTTATAAGATGGTCAATGATCCTACAACCAATGCTATTATTTCATGGAGTTCTACAAATAGGAGTTTCATTGTTTGGGACAAACTTGAATTTTCGAAGGATTTGTTGCCTAGATTTTTTAAGCACAACAATTTCTCGAGTTTTATTAGACAGCTTAACACTTATGGATTTAGAAAGATTAGTCAAAAACAATGGGAATTCTCAAATGATGATTTTGTAAGAGATCAACCAGATCTCATGAAAAATATCTACAAGCGCAGACCTGTTTTTAGCCATTCTGCGTCTTCTGGTGCTGTTGTTGCTGCTGCTCCTCCGTTAACAGAATCAGAGCGGCAGAATCTCAAGGCTCAGATAGAAAAATTTAGAGATGAAAAAGAACAACTACTTATGGAACGTCTGAGGAAGCAAGAGGAGTGGAATCGGAATGAGATGCAGGTGCATTATTCAAAGGATCGTTTGCAACAATTGGAACTGAATAACCAAAGCTTGCTCTCTTCTGTTGGTCAAGTGCTGCAGAAATCCGTAGAAGAGGCAAATCTCCTGCCATCTACGGTAAACACGGGGACAAAACGAAGTTATTTGGGAAATTTTCCCTATAACAATTTAGCAAGCATTGAACTTCCGAAGGAAACTTCGGAAGGGTTAACTAGAGCAAACGCGGAGAGTGCATGCGTTCTCGGTACAAACATGGAAATATTAGATCAGCTGGACTCATCATTGACATTTTGGGAGAATCTTGTAAAGGAAGTTACCGACACGTCTTATGAAACTGGTTCAAACTTGGGCTTTAATGATTCTTTGAATCGTGCACAACTAGATTTTGAAGTTCAGCCCGAGTCATCAGAATACAGAATGAACTCTCTATTAGATTTAACCGTTGTTCCCGATCCTGATCTAGTTGAACTCGAGTTAGATGATATCTTTATTTATGATCCTGATGTACCAGAGCCAGCTGTTGTCGCGGTTCCTGATCCAGTTGCACCTGAGACGGTTGTTACCGTTGTTCCTGACTCGGCTACACCGAAAGAACAACGTCTCGGAACAATCCCGGGTACTAATGAATTTAATTCACCATTTTGGCAAAGATACTTGGTGGAAGATCCTTATGAGTATGAATCAGAAAATCCCCGTGAAATTGCCAAATATTTCTGGAGCATCAGGGATCGAAAAAAACCTCAAATTTATCAATCAGACAAAAAGCTTAGTGAAAAATGA	1266	0.3942	MEQDQISLNSLPAFLSKTYKMVNDPTTNAIISWSSTNRSFIVWDKLEFSKDLLPRFFKHNNFSSFIRQLNTYGFRKISQKQWEFSNDDFVRDQPDLMKNIYKRRPVFSHSASSGAVVAAAPPLTESERQNLKAQIEKFRDEKEQLLMERLRKQEEWNRNEMQVHYSKDRLQQLELNNQSLLSSVGQVLQKSVEEANLLPSTVNTGTKRSYLGNFPYNNLASIELPKETSEGLTRANAESACVLGTNMEILDQLDSSLTFWENLVKEVTDTSYETGSNLGFNDSLNRAQLDFEVQPESSEYRMNSLLDLTVVPDPDLVELELDDIFIYDPDVPEPAVVAVPDPVAPETVVTVVPDSATPKEQRLGTIPGTNEFNSPFWQRYLVEDPYEYESENPREIAKYFWSIRDRKKPQIYQSDKKLSEK*	422

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Psa7g3299	421	ProSitePatterns	HSF-type DNA-binding domain signature.	53	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Psa7g3299	421	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	1	394	IPR027725	-
Psa7g3299	421	Coils	Coil	128	155	-	-
Psa7g3299	421	SUPERFAMILY	"Winged helix" DNA-binding domain	10	103	IPR036390	-
Psa7g3299	421	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-4C	1	394	-	-
Psa7g3299	421	Pfam	HSF-type DNA-binding	14	102	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Psa7g3299	421	SMART	hsfneu3	10	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Psa7g3299	421	Gene3D	-	7	104	IPR036388	-
Psa7g3299	421	PRINTS	Heat shock factor (HSF) domain signature	14	37	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Psa7g3299	421	PRINTS	Heat shock factor (HSF) domain signature	52	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa7g3299	Psa-Chr7	249904007	249905641	Dispersed/Proximal

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa7g3299	6	281	HSF	AT4G18880	45.683	2.61e-63	207

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Psa7g3299		HSF_DNA-bind	4.3e-30	CL0123

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa7g3299	K09419		-	gmx:100798004	311.612

Showing 1 to 1 of 1 entries

Previous1Next