Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa7g3295 | ATGATGGTCAGTGATCCTACAACTGATGCCATTGTTTCATGGAGTGCTACCAATAGAAGTTTCGTTGTTTGGGATCAACCTGAGTTTTCGAAGGAATTGTTGCCTAGATTCTTTAAACATAACAACTTCTCGAGTTTTGTTAGACAGCTTAACACCTATGGTTTTAGTAAGGTTGGTCAAGACCAATGGGAATTCTCAAATGAAGACTTTGTAAGAGATCAACCAAATCTCATGAAGAATATCCACAGGCGCAAACCAGTTTTTAGCCATTCTGCGTCTAATGCTCATAGGCAACGCGCTGCGACTTCTGGTGTTGTTGCTGTTGCTCCATTAACAGAATCAGAACGACGAAATTTCAAAGCTCTGATAGAAAACCTTAGACATGAAAAAGAAGAGCTACTTATGGAACGTCAGAGGCAACAAGAGGAGGGGAATCAAAACAAGATGCAGTTACGTTCCTCGAAGGATCGCTTGCAGCAGTTGGAACTAAATCAACAAACTTTGCACTCTTCCCTTGGTCAAGTGCTGCAGAAATATGCGGAAGAGGCAAGTCTCCTGCCATCTACAGTAAATACGGGGACAAAACGAAGTTATCTGGGAAATTGTCCCTATAAAAATTTAGCAAGCATTAAACTTCCGAAGGAAACTTCAGAAGAGTTATCTAAAGCGAATGTTGAGAGTGCGTCCGCTCTCAGTATAAACATGGAGCGATTGGATCTGCTCGAGTCATCATTGGCGTTTTGGGAGAGTCTTACAAAAGAAGTTACAGACACATCTTTTGAAACTGGTGCAAAGTTGAACTTTGATGATTTTATGAATCCTCCACATGGTCCCGGAATATCTCGTGCGCAACTAGATTTTGAAGTTCCGCCCGAGTCATCAAGAAACAAAACTAACTCTCTGCCAGATTCAGCCGTTGTTCCTAATCCTGATCCAGTAGAACTCGACTTGGATGAAATCTTTATTTATGATCCTGTTGTACCAGAGCCAAATGCTATCGCGGTTCCGGATCTAGTTGCACCTGTGCCGATTGTTACCGTTGTTCCTGACTCCACTACACTGAAAGAGCAACTTGTCGGAACAATCTCAGGTGCCACTGAATTTAATACACCATTTTGGCAAAAATGCTTGGTGGAAGATCCTTATGAGTTTGAATCAGAAAATCCCCGTGAAATTAGAAAATACTGCTGGAGCATCAAGGATCGAAAAAACCCTTAG | 1218 | 0.4187 | MMVSDPTTDAIVSWSATNRSFVVWDQPEFSKELLPRFFKHNNFSSFVRQLNTYGFSKVGQDQWEFSNEDFVRDQPNLMKNIHRRKPVFSHSASNAHRQRAATSGVVAVAPLTESERRNFKALIENLRHEKEELLMERQRQQEEGNQNKMQLRSSKDRLQQLELNQQTLHSSLGQVLQKYAEEASLLPSTVNTGTKRSYLGNCPYKNLASIKLPKETSEELSKANVESASALSINMERLDLLESSLAFWESLTKEVTDTSFETGAKLNFDDFMNPPHGPGISRAQLDFEVPPESSRNKTNSLPDSAVVPNPDPVELDLDEIFIYDPVVPEPNAIAVPDLVAPVPIVTVVPDSTTLKEQLVGTISGATEFNTPFWQKCLVEDPYEFESENPREIRKYCWSIKDRKNP* | 406 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa7g3295 | 405 | Pfam | HSF-type DNA-binding | 2 | 84 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Psa7g3295 | 405 | Gene3D | - | 1 | 85 | IPR036388 | - | |
Psa7g3295 | 405 | PRINTS | Heat shock factor (HSF) domain signature | 33 | 45 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Psa7g3295 | 405 | PRINTS | Heat shock factor (HSF) domain signature | 46 | 58 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Psa7g3295 | 405 | PANTHER | HEAT STRESS TRANSCRIPTION FACTOR A-4C | 2 | 388 | - | - | |
Psa7g3295 | 405 | Coils | Coil | 116 | 143 | - | - | |
Psa7g3295 | 405 | SUPERFAMILY | "Winged helix" DNA-binding domain | 2 | 84 | IPR036390 | - | |
Psa7g3295 | 405 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 2 | 388 | IPR027725 | - | |
Psa7g3295 | 405 | SMART | hsfneu3 | 2 | 84 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa7g3295 | Psa-Chr7 | 249306104 | 249307687 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa7g3295 | 17 | 305 | HSF | AT4G18880 | 40.199 | 2.07e-56 | 189 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HSF | Psa7g3295 | HSF_DNA-bind | 4.2e-28 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa7g3295 | K09419 | - | gmx:100798004 | 299.671 |