Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3294 ATGATGGTCAGTGATCCTACAACTGATGCCATTGTTTCATGGAGTGCTACCAATAGAAGTTTCGTTGTTTGGGATCAACCTGAGTTTTCGAAGGAATTGTTGCCTAGATTCTTTAAACATAACAACTTCTCGAGTTTTGTTAGACAGCTTAACACCTATGGTTTTAGTAAGGTTGGTCAAGACCAATGGGAATTCTCAAATGAAGACTTTGTAAGAGATCAACCAGATCTCATGAAGAATATCCACAGGCGCAAACCAGTTTTTAGCCATTCTGCGTCTAATGCTCATAGGCAACGCGCTGCGACTTCTGGTGTTGTTGCTGTTGCTCCATTAACAGAATCAGAACGACGAAATTTTAAAGCTCTGATAGAAAACCTTAGACATGAAAAAGAAGAGCTACTTATGGAACGTCAGAGGCAACAAGAGGAGGGGAATCAAAACAAGATGCAGTTACGTTCCTCGAAGGATCGCTTGCAGCAGTTGGAACTAAATCAACAAACTTTGCACTCTTCCCTTGGTCAAGTGCTGCAGAAATATGCGGAAGAGGCAAGTCTCCTGCCATCTACAGTAAATACGGGGACAAAACGAAGTTATCTGGGAAATTGTCCCTATAAAAATTTAGCAAGCATTAAACTTCCGAAGGAAACTTCAGAAGAGTTATCTAAAGCGAATGTTGAGAGTGCGTCCGCTCTCAGTATAAACATGGAGCGATTGGATCTGCTCGAGTCATCATTGGCGTTTTGGGAGAGTCTTACAAAAGAAGTTACAGACACATCTTTTGAAACTGGTGCAAAGTTGAACTTTGATGATTTTATGAATCCTCCACATGGTCCCGGAATATCTCGTGCGCAACTAGATTTTGAAGTTCCGCCCGAGTCATCAAGAAACAAAACTAACTCTCTGCCAGATTCAGCCGTTGTTCCTAATCCTGATCCAGTAGAACTCGACTTGGATGAAATCTTTATTTATGATCCTGTTGTACCAGAGCCAAATGCTATCGCGGTTCCGGATCTAGTTGCACCTGTGCCGATTGTTACCGTTGTTCCTGACTCCACTACACTGAAAGAGCAACTTGTCGGAACAATCTCAGGTGCCACTGAATTTAATACACCATTTTGGCAAAAATGCTTGGTGGAAGATCCTTATGAGTTTGAATCAGAAAATCCCCGTGAAATTAGAAAATACTGCTGGAGCATCAAGGATCGAAAAAACCCTTAG 1218 0.4187 MMVSDPTTDAIVSWSATNRSFVVWDQPEFSKELLPRFFKHNNFSSFVRQLNTYGFSKVGQDQWEFSNEDFVRDQPDLMKNIHRRKPVFSHSASNAHRQRAATSGVVAVAPLTESERRNFKALIENLRHEKEELLMERQRQQEEGNQNKMQLRSSKDRLQQLELNQQTLHSSLGQVLQKYAEEASLLPSTVNTGTKRSYLGNCPYKNLASIKLPKETSEELSKANVESASALSINMERLDLLESSLAFWESLTKEVTDTSFETGAKLNFDDFMNPPHGPGISRAQLDFEVPPESSRNKTNSLPDSAVVPNPDPVELDLDEIFIYDPVVPEPNAIAVPDLVAPVPIVTVVPDSTTLKEQLVGTISGATEFNTPFWQKCLVEDPYEFESENPREIRKYCWSIKDRKNP* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3294 405 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 2 388 - -
Psa7g3294 405 SMART hsfneu3 2 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g3294 405 Pfam HSF-type DNA-binding 2 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g3294 405 PRINTS Heat shock factor (HSF) domain signature 33 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g3294 405 PRINTS Heat shock factor (HSF) domain signature 46 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g3294 405 Coils Coil 116 143 - -
Psa7g3294 405 SUPERFAMILY "Winged helix" DNA-binding domain 2 84 IPR036390 -
Psa7g3294 405 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 388 IPR027725 -
Psa7g3294 405 Gene3D - 1 85 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3294 Psa-Chr7 249296024 249297607 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3294 17 305 HSF AT4G18880 40.199 3.39e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa7g3294 HSF_DNA-bind 2.3e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3294 K09419 - gmx:100798004 298.901