Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3240 ATGGCCTCTTCCGATGCTGAGTACCGGTGCTTCGTCGGTGGCCTTGCCTGGACCACCGACAGCGATGGCCTCGCCAAAGCCTTCTCTACTTACGGCGAAATTACCGATTCCAAGGTTATTATGGATCGCGACACTGGAAGGTCGAGAGGTTTTGGATTTGTGACTTTTGCTGCGGAGCAATCTATGAGAGATGCGATTGAAGGGATGAACGGTCAGGATGTTGATGGTCGTAATATTACTGTGAATGAAGCTCAGTCTCGTGGTAGAGGAGGAGGAGGAGGCGGCGGTGGTGGATATGGTGGAGGAGGTGGGGGTTATGGTGGTGGGGGTGGTCGCCGTGAAGGTGGATACAACAGAAACGGTGGTGGCGGTGGGGGATATGGCGGTGGAGGAGGTGGATATGGCGGTGGAGGAAATGGTGGATATGGTGGTGGAAGGGATCGTGGTTATGGAGGCGGTGGTGGTGATAGATATGGTGGCGGAGGCGGCGGTGGTGATAGATATGGCGCTGGTGGAGGAGGCGGTGGTGATAGAAGGATCGTGGTTATGGAGGCGGTGGTGGTGATAGATATGGTGGCGGAGGCGGCGGTGGTGATAGATATGGCGCTGGTGGAGGAGGCGGTGGTGATAGATATGGAGGCGGCGGTGGTGGCGGCTACTCTCGTGGTGGCGGCGGTGGCAGTGGTGGAAACTGGAGGGATTAGGCTAAAGTTTTATCCGTTTGGGATTTAG 732 0.5642 MASSDAEYRCFVGGLAWTTDSDGLAKAFSTYGEITDSKVIMDRDTGRSRGFGFVTFAAEQSMRDAIEGMNGQDVDGRNITVNEAQSRGRGGGGGGGGGYGGGGGGYGGGGGRREGGYNRNGGGGGGYGGGGGGYGGGGNGGYGGGRDRGYGGGGGDRYGGGGGGGDRYGAGGGGGGDRRIVVMEAVVVIDMVAEAAVVIDMALVEEAVVIDMEAAVVAATLVVAAVAVVETGGIRLKFYPFGI* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3240 243 SMART rrm1_1 9 82 IPR000504 GO:0003723
Psa7g3240 243 Gene3D - 2 106 IPR012677 -
Psa7g3240 243 PANTHER TRANSFORMER-2-RELATED 1 115 - -
Psa7g3240 243 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN GRP1A-LIKE 1 115 - -
Psa7g3240 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Psa7g3240 243 SUPERFAMILY RNA-binding domain, RBD 7 116 IPR035979 GO:0003676
Psa7g3240 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3240 Psa-Chr7 243088985 243089981 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3240 11 67 C2H2 Transcription Factor Family AT2G19380 45.614 3.69e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3240 - K13195 ccaj:109800369 149.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g3240 7 243088985 243089981 Psa7g3240 7 243088985 243089981 ECH