Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3128 ATGGATTCTCTATCACTTCACTATGCTGCTTCTTCTTCATCTCAAGACTGCTATGTCTCTAAGGAGGGTACTTCTACGAACTGGTCTTCACCACTTATGAGAGAATGTTATCTTACCAGAAACTTTGAAGAAAACAGCAACAGTGATGATATTGGGGAAGGAAATGGTTCTGATTCTGGTGATGGTGTTGAAGAAAACAGTGACAAAATTAACCTAAATGAAGAGCCCAACCCTAATGAGAATAATACCGGACATTCTAAACTATGTGCGAGAGGTCATTGGAGACCTGCAGAAGATTCTAAGCTAAAAGAACTTGTTGCTCTATATGGTCCTCAGAACTGGAACCTCATTGCTGAAAAGCTACAAGGAAGATCAGGTAAGAGTTGTAGACTTAGATGGTTCAACCAGTTAGATCCAAGAATAAACAGAAGAGCTTTTAGTGAAGAAGAGGAAGAAAGACTAATGCAAGCTCATAGGATTTATGGAAACAAATGGGCTATGATTGCAAGGCTTTTCCCTGGAAGAACGGATAACGCAGTTAAGAATCACTGGCATGTTATAATGGCTAGAAAGTACAGAGAACAATCAAGTGCTTACAGGAGAAGGAAGCTGAGTCAATCGGTTTACAGAAGAATAGAAGATAACACAACAAGCTTTGTCTCAAGAGATATAGATCCAGTTACTTCATCCCATTCTGCTTTCAACTTCCCAAATGGCTATAATATCACTACTTTTCCATATCCATCTTTTCAGGCTGGTGTTGAGTATTTTAGCCCAATGAGTTTCTACCATAATCAACCCCAACATATGATATCAATGCAACAGCAACAACAAAACATGAATCACAATAATAGTAATATTTACAGTTTCTCATCAAATTCAACCACATTAGCAACAAGAGCACAGTTATTGAACAGTGAAGTTTCGCTGTCATCCGTGGCAGCAGAAGACAGAAATGAAGTTCTGATGAGTAATCCCCCTCCATCAGATGCAATTCCATTCATTGATTTTCTTGGAGTAGGAGCCACATGA 1032 0.3886 MDSLSLHYAASSSSQDCYVSKEGTSTNWSSPLMRECYLTRNFEENSNSDDIGEGNGSDSGDGVEENSDKINLNEEPNPNENNTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRKLSQSVYRRIEDNTTSFVSRDIDPVTSSHSAFNFPNGYNITTFPYPSFQAGVEYFSPMSFYHNQPQHMISMQQQQQNMNHNNSNIYSFSSNSTTLATRAQLLNSEVSLSSVAAEDRNEVLMSNPPPSDAIPFIDFLGVGAT* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3128 343 ProSiteProfiles Myb-like domain profile. 138 188 IPR001005 -
Psa7g3128 343 SMART sant 142 190 IPR001005 -
Psa7g3128 343 SMART sant 90 139 IPR001005 -
Psa7g3128 343 MobiDBLite consensus disorder prediction 45 86 - -
Psa7g3128 343 CDD SANT 145 185 IPR001005 -
Psa7g3128 343 PANTHER MYB PROTEIN-RELATED 1 254 - -
Psa7g3128 343 PANTHER MYB PROTEIN-RELATED 260 343 - -
Psa7g3128 343 SUPERFAMILY Homeodomain-like 91 184 IPR009057 -
Psa7g3128 343 ProSiteProfiles Myb-like domain profile. 91 137 IPR001005 -
Psa7g3128 343 MobiDBLite consensus disorder prediction 72 86 - -
Psa7g3128 343 Pfam Myb-like DNA-binding domain 143 186 IPR001005 -
Psa7g3128 343 Pfam Myb-like DNA-binding domain 91 137 IPR001005 -
Psa7g3128 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 192 IPR017930 -
Psa7g3128 343 PANTHER MYB TRANSCRIPTION FACTOR 1 254 - -
Psa7g3128 343 PANTHER MYB TRANSCRIPTION FACTOR 260 343 - -
Psa7g3128 343 Gene3D - 145 214 - -
Psa7g3128 343 Gene3D - 91 142 - -
Psa7g3128 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 137 IPR017930 -
Psa7g3128 343 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3128 Psa-Chr7 227481509 227483313 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3128 67 343 MYB Transcription Factor Family AT1G69560 51.254 3.97e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa7g3128 Myb_DNA-binding 5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3128 K09422 - vvi:100253313 321.627