Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3122 ATGGTGAACAAGAGAAAAGTAAGAGAGTGTGAAGGAAGGGAAGAGAACATTGAAGAAGAAAATACTGAATCGATACAGATAAGAGAGGAGGCAGCATCAGTAGCCGCTGCTCTCCTAAGAGTTCGAAGAGCGAGAAACCGTTTCATTGGGGTGAGGCAAAGACCTTCAGGAAGATGGGTGGCTGAGATCAAAGACACCATACAGAACATAAGATTATGGTTGGGGACTTACAATACTGGTGAAGAAGCTGCCAGAGCTTATGATGAGGCTGCGCGTTTGCTTCGTGGTGCAAACACCCGCACAAATTTCTTTCTTTGTCAATCTTCTCATTATGTTCCTGCTCTTCCCCCAAAGATTGTCAAACTCCTGCTTCTTAGGCTCAAAGCCAGAAACATTGCCTCTTCTTGTGTTCCTACGAGTAATACTACTTTTTTTCCTACTAACCACTATGATGAGCAAGAAACCAACGCAGCACCTGAACCACGTTTTTTTCACCAAATAGAAGAAAACTTTCTAGAAAGTTACAATGGTGCTTGTTATGGTTCTTCTGACATAACTACTATCGACTGTGGCAGTGGGACTAGTGAAGAAGATTTTAACCAAGAGGGTGGCCAAGAGGATTTCAGATCGGGGTATCATTATGCTAACAGTGTTGATGATGGTGGAAACAACCAGATTGTGGGGTGTAATGAAGAATTGGAAGACTCTGATGCTGGCGTCATTGACTTCCAGTTTCTGGATACTGTTGGATCATTAAGCCACCCTTACTCTTCTCCATTTGAGATAGCAGAGGAGATGGTGGGGCCAATGGCAGACGAGAAATTTGATGTGGATGATTCACTGTTACTTAGAGAGACTTTTAGAATGAAGTATGAACGTAAATTCTCAGCTTGCCTTTACACCTTAATTGGGGTGTCTGAGTGTTTGAGACTACAAGTTGGAGAAGAAAATGGAAATGAAATATAA 966 0.4234 MVNKRKVRECEGREENIEEENTESIQIREEAASVAAALLRVRRARNRFIGVRQRPSGRWVAEIKDTIQNIRLWLGTYNTGEEAARAYDEAARLLRGANTRTNFFLCQSSHYVPALPPKIVKLLLLRLKARNIASSCVPTSNTTFFPTNHYDEQETNAAPEPRFFHQIEENFLESYNGACYGSSDITTIDCGSGTSEEDFNQEGGQEDFRSGYHYANSVDDGGNNQIVGCNEELEDSDAGVIDFQFLDTVGSLSHPYSSPFEIAEEMVGPMADEKFDVDDSLLLRETFRMKYERKFSACLYTLIGVSECLRLQVGEENGNEI* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3122 321 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Psa7g3122 321 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Psa7g3122 321 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Psa7g3122 321 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Psa7g3122 321 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 321 - -
Psa7g3122 321 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 321 - -
Psa7g3122 321 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Psa7g3122 321 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Psa7g3122 321 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Psa7g3122 321 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3122 Psa-Chr7 227138497 227139462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3122 45 103 AP2-EREBP Transcription Factor Family AT5G19790 77.966 2.49e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa7g3122 AP2 6.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3122 K09286 - gmx:100793940 340.117