Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3105 ATGGGTAGGTCACCTTGCTGCGAGAAAGTTGGATTGAAGAAAGGTCCATGGACTTCTGAAGAAGACCAAAAACTCATTGCTTACATCGAAGAATTTGGTCATGGAAGCTGGCGTGCATTACCTTCAAAAGCTGGGCTTCAAAGATGTGGTAAGAGCTGCAGACTAAGGTGGACTAACTACCTTCGACCAGACATCAAACGAGGAAAGTTCAGTTTACAGGAAGAGCAAACCATTATTCAACTTCATGCACTTCTCGGAAACAGATGGTCAGCCATAGCAGCTCAACTTCCAAGGAGAACAGACAACGAGATAAAAAACTATTGGAACACACATCTCAAGAAAAGACTAACAAGAATGGGAATAGACCCCACAACTCACAAACCAAAAACCGATACCATATCTGGTGGTGGAAGTAGCAACTGTCAGTACTCCAAAGACTCCGCAAATCTCAGCCACATGGCTCAATGGGAAAGTGCTCGCTTAGAAGCTGAAGCCAGACTTGTTAGAGAAACCAACAAAATGAAAGTTCAAAGACAGCTCGAGTTTGAATCGTCCAAACCTCAAACACCTGCCAGACTTTTTCTCAACAAAATCACACCACTTGTTCAACCTTCACTTCCACCTTGTCTTGATATTCTCAAAGCATGGCAGAGTTCTTGGTCCAACTCCAAACCAATACAAAGCAACGAAACCTCAAACAGCAGCAAAATGCATAGTATGTATGCTATGATGTTGTCTAATGATGAGAATCTTGAATCTCCAACATCTACTTTGAACTTCCCTGGAACAACTCTGCTTCCTCTCCCTCCTCTTCCTCTTCCTGTCCATGTTCCTGTTTCTGTTCCTATGACCAACAACAACGTTGTCCCGTTTCATCAAACTCCACTTTCTTTACCCGACAGCACTAACAATGATGATGAGATATGGAAACAATTCAGTTTAACAAAACAGAACACAGAAGTTGATCATGAAGATGATGATATAATGGCGGCTGTGGAAGCTTTTAGATCATCATGTGGTGGATTTGACAATAACATCCCTCCAATTTCATCCGATGTTCTTCAAGCTCTCGCGAATGGTGGCGGTGGGGATCATGAAAACTTGGATGAAAGCAGCAGCATGATGTGTAACGTGAATCTGGAAGAGAATAAGCATTATTGGAATAGCATACTTGGTTTGGTCAATGAATCTGATGATTTGAACATTGTTCTAGGATGA 1218 0.4212 MGRSPCCEKVGLKKGPWTSEEDQKLIAYIEEFGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPRRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDTISGGGSSNCQYSKDSANLSHMAQWESARLEAEARLVRETNKMKVQRQLEFESSKPQTPARLFLNKITPLVQPSLPPCLDILKAWQSSWSNSKPIQSNETSNSSKMHSMYAMMLSNDENLESPTSTLNFPGTTLLPLPPLPLPVHVPVSVPMTNNNVVPFHQTPLSLPDSTNNDDEIWKQFSLTKQNTEVDHEDDDIMAAVEAFRSSCGGFDNNIPPISSDVLQALANGGGGDHENLDESSSMMCNVNLEENKHYWNSILGLVNESDDLNIVLG* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3105 405 CDD SANT 69 112 IPR001005 -
Psa7g3105 405 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa7g3105 405 SMART sant 13 63 IPR001005 -
Psa7g3105 405 SMART sant 66 114 IPR001005 -
Psa7g3105 405 CDD SANT 16 61 IPR001005 -
Psa7g3105 405 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa7g3105 405 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa7g3105 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa7g3105 405 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 397 - -
Psa7g3105 405 Gene3D - 13 66 - -
Psa7g3105 405 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 397 - -
Psa7g3105 405 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa7g3105 405 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa7g3105 405 Coils Coil 153 173 - -
Psa7g3105 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa7g3105 405 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3105 Psa-Chr7 226180861 226182365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3105 1 397 MYB Transcription Factor Family AT3G01140 46.782 1.34e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa7g3105 Myb_DNA-binding 6.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3105 K09422 - gmx:100799222 470.314