Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3089 ATGGAGGAGAAGCAGAGGAAGTTTGTTTGTAAGTATTGTTTCAAGAGATATCCTTGTGGAAAGTCTCTTGGTGGTCACATCAGAACACATATGAGTGAACAAAGAACTCATAATGCTGCTGCTATTGCTGTTGCTGCTGTTGCTGCCGATGCTCGTGTTTTCAAGCTAGATGGTGTTAGAAACAAGAGAGATTCTGAAACTGTTGGTGGTGCTGATGGAAACAACAGTTACGGTCTTAGAGAGAATCCGAGGAAAACAATGAGGTTTGTGCATTCTCATCATCATCAACATCGTCGTCATGATGATCATGTTGCTGCTGCTGCAACAACCGTGGCCGTGGAGCATGAAATGATCAGATTCTGTAAAGAATGTGGGAAGGGATTTCCTTCGTCGAAAGCTCTTTGTGGTCACATGGCTTCTCATTCTGAGAAAGAGAAAAAGATTAACAGATTTGATCAAGTTATGGAGGATAGTCAATCTGATGATGATGATGATGATGATACTGATGATGATGGTTGTGCTGTTGCTGCAACAATGAATCTGAGGAAATCGAAGAGAAGAATTAGGTTTAAGTCTCTTACTCTTTCAAATCAGAATCTAAATCAAATTCAAAATCAACCTTCTTCTTGTTCTGTTAATGGTTCTTCATCTATGTCAGAGATGGAACACGAACAACAAGAGGTTGCTATGTGTTTGATGCTTTTGTCTAGAGATTTTTTTAGTCATAAGGATCGTTTTGTTTCTGAATCTTCTGATAATAATAGCTCTGTTGTTTTAGAGACAAAACCGTACATTTCTGATAAAAAGATTGTTATTAGAAATGGTAACAAATTTGTCTCTAGTAATGATCATCATGAAGCTGCCGAGAAGAAGCTGAAGCTGCTGAAGTCTGTTGGGATTGGTGTTTCCAATAAATCGGATTCGAAGGATTTCAGATATGCCTCCAAGATCAAAATTGTAGATTCAAAAGTTTCAAACTTTGAATTCAAGAGGCCGAAAGATGAAGAAGATAAATCTGGATTTGTGGATTGCAAAAGCAAATACAATGTAACAACAACAACTGTGGTTAAGAAATCAGGGATGAATAAGGATTTGGATCATGATTCGAGAAAGAACTTGAACTATGAAGGATTTAGTTTCAACAACAACAATAACAAGAATGAAGAAATCCATGAAGATGTTAGAAACGGTTTGAAGTACGAGTTTTATGGCAGCGAAAAGGACAATGATTCTTCTTATGTTTCAACAACAGATGAAGAGAGTGATGAAGAAAACAGTTCAGAAAGTGATTCTTTTACTGCTGCAAAATCTCACAACAGTAAAAAGAAACCAAGTAACAAAGCTAAGAAGAAGTTGAAGTCAAAGAAAAGCAAGGAATATGAATGTCCAATTTGCTACAAAATTTTCAGGTCAGGACAAGCATTAGGAGGACATAAAAGATCACATTTTGTTGGAGGATCTGAAGAAAACACTACTTTTGTGATCAAACAAAATGCTGGTCCTTGTTTGATTGATCTCAATCTACCTGCTCCTGTTGATGAGTAA 1545 0.3689 MEEKQRKFVCKYCFKRYPCGKSLGGHIRTHMSEQRTHNAAAIAVAAVAADARVFKLDGVRNKRDSETVGGADGNNSYGLRENPRKTMRFVHSHHHQHRRHDDHVAAAATTVAVEHEMIRFCKECGKGFPSSKALCGHMASHSEKEKKINRFDQVMEDSQSDDDDDDDTDDDGCAVAATMNLRKSKRRIRFKSLTLSNQNLNQIQNQPSSCSVNGSSSMSEMEHEQQEVAMCLMLLSRDFFSHKDRFVSESSDNNSSVVLETKPYISDKKIVIRNGNKFVSSNDHHEAAEKKLKLLKSVGIGVSNKSDSKDFRYASKIKIVDSKVSNFEFKRPKDEEDKSGFVDCKSKYNVTTTTVVKKSGMNKDLDHDSRKNLNYEGFSFNNNNNKNEEIHEDVRNGLKYEFYGSEKDNDSSYVSTTDEESDEENSSESDSFTAAKSHNSKKKPSNKAKKKLKSKKSKEYECPICYKIFRSGQALGGHKRSHFVGGSEENTTFVIKQNAGPCLIDLNLPAPVDE* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3089 514 MobiDBLite consensus disorder prediction 409 454 - -
Psa7g3089 514 ProSitePatterns Zinc finger C2H2 type domain signature. 10 30 IPR013087 -
Psa7g3089 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 460 482 IPR013087 -
Psa7g3089 514 SUPERFAMILY beta-beta-alpha zinc fingers 120 482 IPR036236 -
Psa7g3089 514 Gene3D Classic Zinc Finger 120 173 - -
Psa7g3089 514 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 514 - -
Psa7g3089 514 ProSitePatterns Zinc finger C2H2 type domain signature. 462 482 IPR013087 -
Psa7g3089 514 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 514 - -
Psa7g3089 514 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Psa7g3089 514 SUPERFAMILY beta-beta-alpha zinc fingers 5 35 IPR036236 -
Psa7g3089 514 SMART c2h2final6 460 482 IPR013087 -
Psa7g3089 514 SMART c2h2final6 8 30 IPR013087 -
Psa7g3089 514 SMART c2h2final6 119 141 IPR013087 -
Psa7g3089 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Psa7g3089 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 35 IPR013087 -
Psa7g3089 514 MobiDBLite consensus disorder prediction 440 454 - -
Psa7g3089 514 Pfam C2H2-type zinc finger 121 143 - -
Psa7g3089 514 Pfam C2H2-type zinc finger 8 33 - -
Psa7g3089 514 Pfam C2H2-type zinc finger 460 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3089 Psa-Chr7 224931320 224934624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3089 1 514 C2H2 Transcription Factor Family AT1G26610 36.347 4.69e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa7g3089 zf-C2H2_6 0.00011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3089 - - mtr:MTR_4g082980 456.447