Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3070 ATGTACCCTCAACCCTTCAATTCACAACAACAAGAACAACAACAACCCTACTATTCGTTTTTCCCTCGCACTTCAGATTCTTCGCTTCATCCTCCCGGCACTAACCCAGTTGCAAATTCAGCACCTTTTCCCGCCACCCAAACAGCAGATTATCAGAATTGGGTCGCTCAACAACCTGAACCCATCGGTTACGATCTTCCCAATGCGGCTGGTTCATCATACGAGACTTCTGCGCCTTCTGCATGGAATGCTACATGGCCACATCAAGTTTATGGCAACGAGACTACAACAATGTTGCCTAACCAAACCAAATTCACCCATGCGTTGAGGTGTGAAGTGTGTAAACTTGATGTCAATAGCCGAGATTCATATGAAAAGCACATCGCCGGAAAGAAACATAAGAAAAATTTACAAAGTGGCATAAGTAGCTTCCAAGTACAAGCGTTAATTGGTCCTGTAGTCAAGCAACCGGAGACTAAGAACCAGGTGGTACAGTCAAAGGTTTGCACAACTTGCAATGTTTTGTGCACGAGTCACGACACATATATTAAACATATTGCCGGGAAAAAGCACGCAGCTCAGGTTTGCTTGATGTCTAATGGTGGCATTGGTCCATCTATTGCCGAATTCAAGCGTAACGGAGTTGCTCCGTTTCAAAAAGCCGCTAAGAAAATCAAGGTTGCTCAATCTGCATGGTGTGAAACTTGTAAGATTAATTGTAACAGCAGGGATATGTATATTACACACTTAGCCGGAAAGAAACACTTGAAGAACTTGGAGAAACTGTCGAATCCGAAAATCGACGTTGGCACCAGTTCCACTGCCACTGCTTCAAATACTCTAATCGGACCACAGGAAAAGCCAGGTACCGATAAACCAAAAGCAACGAAGGCATCAGAACTTGATATCGAGGCGAAGAAACGGAAAGTTGTGGAAGGAGGAACTGCGGTTAATAATGTTAAAACGTGTACTTTATGCAATGTGGTGTGTAATAGCGAGACAGTTTTCAATCTTCACCTTGTTGGGCAGAAGCATGCTGCTATGGTGAAGAAAGCAGGGTGA 1062 0.4397 MYPQPFNSQQQEQQQPYYSFFPRTSDSSLHPPGTNPVANSAPFPATQTADYQNWVAQQPEPIGYDLPNAAGSSYETSAPSAWNATWPHQVYGNETTTMLPNQTKFTHALRCEVCKLDVNSRDSYEKHIAGKKHKKNLQSGISSFQVQALIGPVVKQPETKNQVVQSKVCTTCNVLCTSHDTYIKHIAGKKHAAQVCLMSNGGIGPSIAEFKRNGVAPFQKAAKKIKVAQSAWCETCKINCNSRDMYITHLAGKKHLKNLEKLSNPKIDVGTSSTATASNTLIGPQEKPGTDKPKATKASELDIEAKKRKVVEGGTAVNNVKTCTLCNVVCNSETVFNLHLVGQKHAAMVKKAG* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3070 353 Gene3D Classic Zinc Finger 154 197 - -
Psa7g3070 353 Gene3D Classic Zinc Finger 94 139 - -
Psa7g3070 353 Gene3D Classic Zinc Finger 301 352 - -
Psa7g3070 353 Gene3D Classic Zinc Finger 217 262 - -
Psa7g3070 353 PANTHER ZINC FINGER RNA-BINDING PROTEIN 98 138 - -
Psa7g3070 353 PANTHER ZINC FINGER RNA-BINDING PROTEIN 145 352 - -
Psa7g3070 353 SMART c2h2final6 321 345 IPR013087 -
Psa7g3070 353 SMART c2h2final6 167 191 IPR013087 -
Psa7g3070 353 SMART c2h2final6 231 255 IPR013087 -
Psa7g3070 353 SMART c2h2final6 109 133 IPR013087 -
Psa7g3070 353 PANTHER SI:CH211-197H24.6 98 138 - -
Psa7g3070 353 PANTHER SI:CH211-197H24.6 145 352 - -
Psa7g3070 353 MobiDBLite consensus disorder prediction 274 298 - -
Psa7g3070 353 SUPERFAMILY beta-beta-alpha zinc fingers 316 351 IPR036236 -
Psa7g3070 353 SUPERFAMILY beta-beta-alpha zinc fingers 86 138 IPR036236 -
Psa7g3070 353 SUPERFAMILY beta-beta-alpha zinc fingers 156 195 IPR036236 -
Psa7g3070 353 SUPERFAMILY beta-beta-alpha zinc fingers 229 262 IPR036236 -
Psa7g3070 353 SMART ZnF_U1_5 164 198 IPR003604 GO:0003676|GO:0008270
Psa7g3070 353 SMART ZnF_U1_5 318 352 IPR003604 GO:0003676|GO:0008270
Psa7g3070 353 SMART ZnF_U1_5 228 262 IPR003604 GO:0003676|GO:0008270
Psa7g3070 353 SMART ZnF_U1_5 106 140 IPR003604 GO:0003676|GO:0008270
Psa7g3070 353 Pfam Zinc-finger of C2H2 type 322 345 - -
Psa7g3070 353 Pfam Zinc-finger of C2H2 type 232 255 - -
Psa7g3070 353 Pfam Zinc-finger of C2H2 type 110 133 - -
Psa7g3070 353 Pfam Zinc-finger of C2H2 type 168 191 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3070 169 352 C2H2 Transcription Factor Family AT5G61190 28.261 1.12e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa7g3070 zf-met 6.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3070 - - cam:101495339 474.167