Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3059 ATGCTGGGTGGGTTATACGGTGACCTACCTCCACCTTCTTCCGCCGAAGAAGACAAACCCACCACCAATGTCTGGTCCAGCAGCACCAAAATGGCCCCCGCCATCGAAATGCTGGGTGGGTTATACGGTGACCTACCTCCACCTTCTTCCGCCGAAGAAGACAAACCCACCACCAATGTCTGGTCCAGCAGCACCAAAATGGCCCCCGCCACTCTCCGTAAGCCCTCCTCTATTTTCACTCCTCCTCATACTCTTCTCAGATCCCAAAACAAACCTAAAATCTCCAATTCCAAAACGATTCTGTCCACGGCACCGGCGATACTCGCTCCGGCGGTAGACGAGGTGGTGCAACCGGCTCTGGTAGGTGTGCAGTCGACGGTGTTGGAAGAGTATGATCCAGCAAGGCCTAATGATTACGAAGAGTATCGGAGGGAGAAGAAGAGGAAGGCTAGGGAGGCGGAGATGATGAGGGAGCTAGAGAGACGGCGTGAGGAGGAGGAAGAGAGGGAGAGAGAGAGGGAAAGAGAGAGAAAAAAAGAAAGAGAAAGAGATAGGGATAGGGATCAGGGTGATTCGAGATTGAATATTTCAGGGGAAGAAGCATGGAGGAGGCGTGTGGGGATGAGTGCTGGTGGAAGTGGAGGGGCGGTGCCGAGGTCGCCGTCACCGCCGGTCGGAGACGGGAGGGTTGGGGTGAGGAGGCGTGTGGGGATGAGTGCTGGTGGAAGTGGAGGGGCGGTGCCGAGGTCGCCGTCACCGCCGGGTAATGTGGATGGATTTACTATTGGAAAGTCGGAGACGGGAGGGTTGGGGGTTGGTGCTGGTGGGCAGATGACTGCTGCTCAGAGGATGATGGCGAAGATGGGGTGGAAAGAAGGGCAGGGGCTTGGGAAGCAAGAGCAAGGGATTACTACTCCTTTGATGGCTAAGAAAACGGATAGACGAGCCGGGGTTATTGTCAATGCTAGTGATAGTAAGTCTGATAAGAAAGTCAAGAGTGTTAACATCAATGGGGTTCCTACCAGAGTGATGCTACTTAGAAATATGGTGGGGCCTGGTGAGGTAGATGATGAGCTGGAAGATGAGGTAGGATCAGAATGCGCAAAGTATGGAACAGTAACCCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTCCCAACTGACGAAGCAGTAAGAATCTTTGTGCAGTTCGAGAGATCTGAAGAAACAACTAAAGCGCTTGTTGACCTTGATGGTCGATACTTTGGAGGTAGAATAGTGCGTGCCACATTTTATGATGAGGATAAGTTTAGCAAGAATGAGTTAGCTCCTATGCCTGGAGAAATTCCTGGATTCACCTAG 1344 0.5193 MLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPAIEMLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPATLRKPSSIFTPPHTLLRSQNKPKISNSKTILSTAPAILAPAVDEVVQPALVGVQSTVLEEYDPARPNDYEEYRREKKRKAREAEMMRELERRREEEEERERERERERKKERERDRDRDQGDSRLNISGEEAWRRRVGMSAGGSGGAVPRSPSPPVGDGRVGVRRRVGMSAGGSGGAVPRSPSPPGNVDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDSKSDKKVKSVNINGVPTRVMLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALVDLDGRYFGGRIVRATFYDEDKFSKNELAPMPGEIPGFT* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3059 447 SUPERFAMILY RNA-binding domain, RBD 341 431 IPR035979 GO:0003676
Psa7g3059 447 MobiDBLite consensus disorder prediction 1 25 - -
Psa7g3059 447 Gene3D - 338 436 IPR012677 -
Psa7g3059 447 PANTHER SPLICING FACTOR 45 SPF45 37 438 IPR040052 GO:0045292
Psa7g3059 447 Pfam G-patch domain 280 319 IPR000467 GO:0003676
Psa7g3059 447 ProSiteProfiles G-patch domain profile. 277 323 IPR000467 GO:0003676
Psa7g3059 447 MobiDBLite consensus disorder prediction 45 82 - -
Psa7g3059 447 Coils Coil 139 189 - -
Psa7g3059 447 CDD RRM_UHM_SPF45 340 436 IPR034653 -
Psa7g3059 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 332 428 IPR000504 GO:0003723
Psa7g3059 447 MobiDBLite consensus disorder prediction 133 200 - -
Psa7g3059 447 MobiDBLite consensus disorder prediction 129 228 - -
Psa7g3059 447 SMART G-patch_5 275 321 IPR000467 GO:0003676
Psa7g3059 447 PIRSF SPF45 39 443 IPR040052 GO:0045292
Psa7g3059 447 PIRSF SPF45 3 36 IPR040052 GO:0045292
Psa7g3059 447 SMART rrm2_1 343 424 IPR003954 GO:0003676
Psa7g3059 447 MobiDBLite consensus disorder prediction 52 82 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3059 283 318 C2H2 Transcription Factor Family AT5G26610 61.111 1.52e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3059 K12840 - gmx:100800998 489.574