Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3056 ATGCCAGGAACTGAAGTTGATGTTGCTCCAAAGACACGCAAAAGAAATTCAGATTCGCCAGGAGATTCACATGTAGGTTCCAATAGTGAAGAGCATACTGCAAAGATGCTGCTTCGTTTACAGGAACCAAATGATTTATGCCGTACGAGTACTCATGTCAAAGGTGTTGAGCTTCATGTAGGGCTTACTCCGGTTGCTTTTGTTCATCCAGAAACAGCCAAGCGCTTCTCATTTAACATGCTTCAGTTGGTCTCCATAGTGCCAAGAGTATTATCCAAAGAGAATGTTAAAAATTCCAGAACCAAATCAAACATTATGAAAGCCAAAGGTAGTTCAGCTGTTAATCAAGTTGAGAATGGAGATACCGACAACAAGGAAAATCGACAAGCAATTGTTCATCTGTTGATTTCAGAATCTGTGGCTAAAGGACATGTAATGCTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGCATGTGATGTTATTTTGGAAAAAAACATTCCTTCCATTTCTCTTTCTCCTTGTCGATTCAAACTGTTAAGGCAGGAGAGCACTGTTGTGAAAGATGGTCTAGATGATTTTCACGGCCACAGGAATCACATTGATGGAAAATTGCATGGAAAAGCTACTTCAGGTGTCTTTTTGGATACCCTAAATTGGTCGATCCACAATGAAGTTGTTGCAGCTCTCTCTGATGAATCTAGTAACAAAGCAGACGAAGAGGTTGCAAACCAATCTCAGAATCAAAAGGGATTACAAAATCTTGTACGACTATGGTATATTGCCCAGCTTGAGGCAATTACTTCCATTACGGGGGTGGAAGTTAATTCATTGGTTATCGGTAGTAAAACTTTGCTTCATTTTGAATTAAGCTGTTACAAGATTGGGAGTGATGAGAAGCTTCAGCTGACTTCTTCAGAAAACATCGGCAAGACAGTTGAAATGTTATTTTTATTGACCTTTGGTGAAGAAGATCTGCATCATGGGAAACTTAATGCATATGAAGTTTCACTTGGTGGAAAACTCAATAACATCAACATTGAGGATCTGAAGCTTTTTGAAAGAGTGAAATTGGGTGATCCTGTTTCTCTTCGTTTTATGGAAGACAGAGCCTCCAAAGACCACATTAGTTCAAATGTATCTTTCCTTGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAATAGGATGTTGGTATTGTTATCTTCAGCATGTGGTTTGTGGTTTGGCTCATGCAACCTGCCACTTCCCGGACATGTTCTAATATATGGACCTCCGGGCTCTGGGAAAACTATACTAGCAATGAATGTGGCAAAATCCCTTGAGAATCGTGAAGACATCTTAGCGCACATAATTAGTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCCAATTATTCGCCAAGAACTTGCAAACCATATAACTGAAGCTATAAACCATGCACCTTCTGTTGTCATCTTTGATGATCTTGACAGTATAATTTCTACCCCTGATTCCGAAGGATCTCAGCCATCAATGTCTGTTGCTGGACTCACAGATTTTCTTGCTGACATTATGGATGAATATGGGGAGAAGAGGCGGAAATCATGTGGATTTGGACCAATAGCTTTCATAGCAACCATACAGTCCCTAGAGAATATGCCACAATCTTTGAGCTCTTCAGGACGATTTGACTTTCACATTAAGCTGCCTGCTCCTGCAGCTTCTGAGCGAAAGGCCATGTTGAAGCATATAATACAAAGGCGGCACTTGCAATGTAATGATGACATCCTACTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATATTAGTTGACAGAACTGTCCATGCTGCTGTTCGCCGTTTTCTGCCATCTAATGCCATTTATGAGCACGAGGGTCCTGCTTTAGTACAGGAGGATTTCTCTTTGGCAATGCATGATTTTCTCCCGGTTTCAATGCGTGACATCACAAAGTCCGTTTCTGATGATGGCCGTTCTGGATGGGACGATGTTGGTGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATAGAATTGCCATCAAAGTTTCCAAAAACTTTTGCACAAGCACCATTAAGGTTGCGGTCAAATATCCTTTTGTATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTCGGTGCTGCTGCGGCTGCTTCTTCACTTCGATTCATATCAGTGAAAGGTCCAGAACTGTTGAACAAATATATTGGTGCTTCAGAACAAGCTGTTAGAGATATATTCTCCAAAGCAGCTGCTGCAGCACCGTGCCTACTTTTTTTTGATGAATTTGATTCTATTGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACTGATCGTGTTGTCAATCAATTTTTGACAGAGTTAGACGGTGTTGAGATTTTAGCTGGTGTTTTTGTGTTTGCTGCAACCAGTAGACCCGACTTACTGGATGCGGCACTCTTGAGACCGGGTAGGTTAGATCGTCTTCTATTTTGTGACTTTCCATCATGGCATGAGAGATTGGAAATTCTTACAGTACTTTCTAAAAAGTTACCAATGGCCGGTGATATTGATTTGGCTACAGTAGCTAATGTGACTGAAGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCACAACTTGCTGCAGTTCATGATATTCTTGACAATATCAATACGTCTAGATCAGAGAAAACTCCAGTTATTACTGATGCTCTTCTAAAGCTCACTGCATCTAATGCCAGACCGTCTGTTTCAGAGGAAGAGAAAAGACGACTCTACAGTATTTATCGCCAGTTCCTGGATTCCAAGAGATCTGTTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGAGCAACTCTAGCGTGA 2907 0.4138 MPGTEVDVAPKTRKRNSDSPGDSHVGSNSEEHTAKMLLRLQEPNDLCRTSTHVKGVELHVGLTPVAFVHPETAKRFSFNMLQLVSIVPRVLSKENVKNSRTKSNIMKAKGSSAVNQVENGDTDNKENRQAIVHLLISESVAKGHVMLAKSLRLYLRASLHSWVYLKACDVILEKNIPSISLSPCRFKLLRQESTVVKDGLDDFHGHRNHIDGKLHGKATSGVFLDTLNWSIHNEVVAALSDESSNKADEEVANQSQNQKGLQNLVRLWYIAQLEAITSITGVEVNSLVIGSKTLLHFELSCYKIGSDEKLQLTSSENIGKTVEMLFLLTFGEEDLHHGKLNAYEVSLGGKLNNINIEDLKLFERVKLGDPVSLRFMEDRASKDHISSNVSFLGWMEKTASDVINRMLVLLSSACGLWFGSCNLPLPGHVLIYGPPGSGKTILAMNVAKSLENREDILAHIISVSCSKLALEKVPIIRQELANHITEAINHAPSVVIFDDLDSIISTPDSEGSQPSMSVAGLTDFLADIMDEYGEKRRKSCGFGPIAFIATIQSLENMPQSLSSSGRFDFHIKLPAPAASERKAMLKHIIQRRHLQCNDDILLDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPSNAIYEHEGPALVQEDFSLAMHDFLPVSMRDITKSVSDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSKKLPMAGDIDLATVANVTEGFSGADLQALLSDAQLAAVHDILDNINTSRSEKTPVITDALLKLTASNARPSVSEEEKRRLYSIYRQFLDSKRSVAAQSRDAKGKRATLA* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3056 968 ProSitePatterns AAA-protein family signature. 815 833 IPR003960 GO:0005524|GO:0016887
Psa7g3056 968 MobiDBLite consensus disorder prediction 1 30 - -
Psa7g3056 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 634 IPR027417 -
Psa7g3056 968 CDD AAA 423 574 - -
Psa7g3056 968 CDD AAA 681 844 - -
Psa7g3056 968 Gene3D - 846 925 - -
Psa7g3056 968 Gene3D - 380 576 IPR027417 -
Psa7g3056 968 Pfam AAA+ lid domain 867 906 IPR041569 -
Psa7g3056 968 Gene3D - 577 670 - -
Psa7g3056 968 Pfam ATPase family associated with various cellular activities (AAA) 715 842 IPR003959 GO:0005524|GO:0016887
Psa7g3056 968 Pfam ATPase family associated with various cellular activities (AAA) 429 574 IPR003959 GO:0005524|GO:0016887
Psa7g3056 968 PANTHER - 1 965 - -
Psa7g3056 968 SMART AAA_5 425 577 IPR003593 -
Psa7g3056 968 SMART AAA_5 711 847 IPR003593 -
Psa7g3056 968 Gene3D - 676 938 IPR027417 -
Psa7g3056 968 PANTHER AAA-FAMILY ATPASE 1 965 - -
Psa7g3056 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 677 936 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3056 Psa-Chr7 223259961 223277978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3056 709 914 Calmodulin-binding Proteins AT3G56690 37.619 1.25e-36 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3056 K13338 - gmx:100803882 1587.39