Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3054 ATGAAAGAAGGTAGGAAACAAGGTGCAGCCTCACCCTGTGCTGCATGCAAACTTCTAAGAAGAAGATGTGCTCAAGATTGTGTCTTTGCTCCTTATTTCCCTGCCGACGAACCCCACAAGTTTGCTAATGTCCATAAAGTCTTTGGCGCTAGCAATGTCAACAAGATGCTTCAGGACTTACCTGAACATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCAAATGCAAGAGTGAGAGACCCTGTGTATGGTTGTGTAGGGGCAATTTCGTCACTTCAGCAACAAATTGATGTTCTACAAACCCAATTGGCTGTGGCACAAGCTGAGGCTGTGCACCTGAGGGTGCGCCAAACTGCACCCTCCTTTTGGAACAGTGCAGGACATAGCCCAACAAGCCCAACCTATAGTGGCTCTCCATCATCCAAAATCAATGAATCACAAGCCAAACATATTTTTGATATGGACATGGTGGTGGACCAAGGTGGTTATGCTGATTCAATGTGGTGA 513 0.4639 MKEGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTAPSFWNSAGHSPTSPTYSGSPSSKINESQAKHIFDMDMVVDQGGYADSMW* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3054 170 Coils Coil 91 111 - -
Psa7g3054 170 MobiDBLite consensus disorder prediction 126 145 - -
Psa7g3054 170 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Psa7g3054 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 157 - -
Psa7g3054 170 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Psa7g3054 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 3 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3054 Psa-Chr7 223217808 223222074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3054 1 170 AS2 family AT1G31320 69.540 3.47e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa7g3054 LOB 7.7e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3054 - - jre:108980655 270.781