Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2978 ATGTCTGATTCTTTCTGTAGTTTTCTCTCTTCTACTCCAAATTCCAACCATAATTCTCATGCACCTCCAAAAATCTCTCCCATAGTTCAACCTTATTGCATTTGCACCCATTGCAATCATCTCCTCCCCTTCGATCACCACCCCGGAACGTTTGACTGCAACGGCGTGGACCAAGGTACAAGCAATACTATGCAGCCACAGCAAAGCTCAAGGTGGAGTCCAACGCCAGTTCAACTACTAGTCCTTGAAGAGTTATATAGGAAAGGCATGAAAACACCATCAGCGGAACAAATCCAACAAATAGCTTTGCAGCTTCGGCAATTCGGGAAAATCGAAGGGAAAAACGTGTTCTATTGGTTCCAGAATCACAAGGCTAGAGAGCGGCAGAAGCGTCGTCGCCGGGAGATGGAGGAAACAACTGGCTCTTCAACTGAAGATAAAAAAGAGAAAGATAAGTACATTATGAGCAACTCAGAAGCTGCTGCAGGATTGAAAGAGACAGGTAGTGGAGTTAAAGAGACAAAGAAGTGGGCAACCACTTCAAACTGCAGTGAACAAGCAGAGGATATATCAGAAAAAAGATCAATACAAGTTTTGAGGAAAAACATAGCTACAGAAAGTGAAGGAAAGTGCCAAAATACTGAGATTCCTTATTACTTGACACCTTTTACTTCAGCAGCATATAGAACATGTAGTAATAGTAACACACCTCAAAGCTATGGTTTATTACCATTTGACAAAGAAAATTTCAACTATTATGAAGAAGAAAATGCAGGTCCTAGTCCTAGGACACTTGATCTTTTTCCAGTTAAGGAAGATGAACAAGATGGAAAATCTATGTTGTGTGTTAATGATTCTATGGACACTGAAGTAACATCTTCCTCCAACCAGTTTTTTGAGTTTCTTCCTTTAAGAAATTGA 921 0.4039 MSDSFCSFLSSTPNSNHNSHAPPKISPIVQPYCICTHCNHLLPFDHHPGTFDCNGVDQGTSNTMQPQQSSRWSPTPVQLLVLEELYRKGMKTPSAEQIQQIALQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEETTGSSTEDKKEKDKYIMSNSEAAAGLKETGSGVKETKKWATTSNCSEQAEDISEKRSIQVLRKNIATESEGKCQNTEIPYYLTPFTSAAYRTCSNSNTPQSYGLLPFDKENFNYYEEENAGPSPRTLDLFPVKEDEQDGKSMLCVNDSMDTEVTSSSNQFFEFLPLRN* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2978 306 ProSiteProfiles 'Homeobox' domain profile. 65 130 IPR001356 GO:0003677
Psa7g2978 306 SMART HOX_1 67 134 IPR001356 GO:0003677
Psa7g2978 306 MobiDBLite consensus disorder prediction 131 151 - -
Psa7g2978 306 SUPERFAMILY Homeodomain-like 63 132 IPR009057 -
Psa7g2978 306 CDD homeodomain 71 125 IPR001356 GO:0003677
Psa7g2978 306 MobiDBLite consensus disorder prediction 127 151 - -
Psa7g2978 306 Gene3D - 56 146 - -
Psa7g2978 306 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 15 306 IPR044555 GO:0003700|GO:0099402
Psa7g2978 306 Pfam Homeodomain 69 129 IPR001356 GO:0003677
Psa7g2978 306 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 15 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2978 Psa-Chr7 217028114 217030543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2978 69 220 Wox Gene Family AT3G18010 47.368 2.34e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Psa7g2978 Homeodomain 1.2e-18 CL0123