Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2972 ATGGAAAACATTCTAGGCCTTATCAGAATTCGTATCAAAAAAGGCACTAATCTCATAGCTCGTGATTCTCGTACCAGTGACCCTTATGTTCTTGTCACCATGGCTCAACAGACACTAAAAACTGCTGTTGTGAAAGATAACTGCCACCCAGAATGGAATGAAGAATTGACACTATATATTCAAGATAAAGATCTTCACACAAACACACCAATAGAACTTACGGTTTGCGACAAGGACACTTTCAGTGTGGACGACAAAATGGGGGAAGCGTTCATAGACATTAAGCCGTATCTTCATTGTGTGAAGATGGGGCTTACCGATATCCCGGAAGGACATGTTGTGAAGATTGTTCAACCAGATAGGACTAACTGTTTAGCCGAAGAGAGTAGATGCATATGGAGAAACGGAAAACTCGTCCAAGAAATGACTTTGAGGTTAAGAAATGTTAAGTCGGGTGAAATATTCATTGAAATTGAATGGATTGATGTTACAGATTCCAAAGGCTTATCTGAGGCTGATTTATAG 525 0.3981 MENILGLIRIRIKKGTNLIARDSRTSDPYVLVTMAQQTLKTAVVKDNCHPEWNEELTLYIQDKDLHTNTPIELTVCDKDTFSVDDKMGEAFIDIKPYLHCVKMGLTDIPEGHVVKIVQPDRTNCLAEESRCIWRNGKLVQEMTLRLRNVKSGEIFIEIEWIDVTDSKGLSEADL* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2972 174 Pfam C2 domain 7 96 IPR000008 -
Psa7g2972 174 Gene3D C2 domain 5 107 IPR035892 -
Psa7g2972 174 SMART C2_3c 7 106 IPR000008 -
Psa7g2972 174 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 171 IPR044562 -
Psa7g2972 174 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 171 - -
Psa7g2972 174 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Psa7g2972 174 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 162 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2972 Psa-Chr7 216467288 216467970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2972 39 170 C2H2 Transcription Factor Family AT1G70790 52.239 1.02e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2972 - - gmx:100781585 263.848