Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2960 ATGGAAACCAGTAGCGGCAATAACAGCAGTAACATGATGTGGTTTTTCAAAGATAGAGGCTTTGATGATAACATCATACAAGGAATGTTCAAAAAATGCAAGCGCCTCGAGATGGTTCATCAAGAAAGAGCAAGTGAGAATTGGGAGTATTTGAAAACCATTGGAATTCTAGAAAGGAAACTCCCGTCGATTGTTTCAAAATGCCCGAAAATTCTCGTGCTTGGGCTCAATGAGAAGATTCTCCCCATGGTTGAATGTCTCAACACACTTGCAACAAAGCCTCATGAAGTTGCCTCTGCTATTGCTAAGTTCCCTCACATACTCTCGTATAGTGTGGAAGAGAAGCTTTGTCCCGTTTTGGCCTTTTTTCAAGCATTAGGCGTCCCTGAAAAGCAAATCGGGAAAATTCTACTGTTAAACCCTAGGCTTATTAGTTACAGTATTGAGACAAAGATGGGGGAGATTGTGAAGTTTCTTGCTAGCATTGGTCTTGATAAAGACGGAATGGTTGGTAAAATTTTGGTCAAGGACCCGTTTATTATGGGTTATAGTGTTGATAAAAGGCTCCGTCCTACTTCGGAGTTTTTGAAATCAATTGGTCTGACTAAGCAGGATCTTCAAGTGCTGGCATTGAACTTCCCGTCGATTTTGAGTAGAGATGTGAACAAGGTTTTGGTGCACAATTACGATTACTTAAAGAATCGTGGATTTCAAGGGCGACAGATAGTTGATTTGGTGGTTGGTTTTCCTCCTATCCTAATCAAGAGCGTCAGGAATTCTTTAGAACCGAGGATCAAGTTTTTGGTAGATGTAATGGGGAGACAAGTCGATGAAATCATTGATTATCCTTGCTTCTTTCGTCACGGCCTGAAGAAAAAATTAGTGTTGCGGCATAAACTACTACAACAGAGGAATTTAAATTGCAGCTTGAGTGAAATGCTGGACTGTAATGAGAAGAAGTTCCACTTGAAGTTTGGCTTGTTAGAAGGACATGCCTTGAGTAACTAG 1008 0.4067 METSSGNNSSNMMWFFKDRGFDDNIIQGMFKKCKRLEMVHQERASENWEYLKTIGILERKLPSIVSKCPKILVLGLNEKILPMVECLNTLATKPHEVASAIAKFPHILSYSVEEKLCPVLAFFQALGVPEKQIGKILLLNPRLISYSIETKMGEIVKFLASIGLDKDGMVGKILVKDPFIMGYSVDKRLRPTSEFLKSIGLTKQDLQVLALNFPSILSRDVNKVLVHNYDYLKNRGFQGRQIVDLVVGFPPILIKSVRNSLEPRIKFLVDVMGRQVDEIIDYPCFFRHGLKKKLVLRHKLLQQRNLNCSLSEMLDCNEKKFHLKFGLLEGHALSN* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2960 335 SMART mt_12 243 275 IPR003690 GO:0003690|GO:0006355
Psa7g2960 335 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Psa7g2960 335 SMART mt_12 207 238 IPR003690 GO:0003690|GO:0006355
Psa7g2960 335 SMART mt_12 171 202 IPR003690 GO:0003690|GO:0006355
Psa7g2960 335 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Psa7g2960 335 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Psa7g2960 335 SMART mt_12 27 57 IPR003690 GO:0003690|GO:0006355
Psa7g2960 335 SMART mt_12 62 93 IPR003690 GO:0003690|GO:0006355
Psa7g2960 335 PANTHER CGI-12 PROTEIN-RELATED 11 328 IPR003690 GO:0003690|GO:0006355
Psa7g2960 335 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL 11 328 - -
Psa7g2960 335 Pfam mTERF 11 123 IPR003690 GO:0003690|GO:0006355
Psa7g2960 335 Pfam mTERF 113 321 IPR003690 GO:0003690|GO:0006355
Psa7g2960 335 Gene3D Transcription termination factor 3, mitochondrial 90 329 IPR038538 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa7g2960 mTERF 1e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2960 K15032 - gmx:100816929 542.347