Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2935 ATGCCTTTATCATATTTTAACATCGCGAAATCCAGCACATTCTGTAGCTACAGGCTCATTCACAAAGCTGCACCATTTTCTACCATTCAACATGCTTCATTATTCAACCAACAACATTCTTCCATTTTCTCCTCACTCTTACGCGAATTCTCGAACACCCTCATCCATGTCAAGTCCATCCACGCACAGATTATTAGGAACTGTGTATCCACTCAACACTTTCTCGCCACAAAACTCATCAAAGCATATTCTGATCTGGGTTTTCTCAATTCTGCATACAAGGTGTTTGATCAATTTCCTCATCCGGAAACCGCGCTGTGTAATGCTATGATGGGTGGATTCCTTAAGAACCGCGAATATGAGGAGGTTCCCAGGTTGTTTAAAATGATGGGGTCTTGTGATATTGGAGTGAATAGTTACACATCTGTCTTTGCTCTCAAGGCTTGCACTGTTTTATTGGAGAAGGAGATTGGTATGGAAGTTGTTAGGATGGCTGTTAGAAAGGGGTTTCATTTGCATCCTCATGTTGGGAGTTCGGTGATTAACTTTTTGGTGAAATCTGGTGATCTTGATGAGGCGCGAGTGGTTTTCGATGGGATGCCTGAAAGGGATGTTGTTTGTTGGAATTCAATTATTGGAGGTTATGTGCAGGAGTGTCTTTTCAAGGAGGCGATTCAAATGTTTGTTGAGATGATTGGTTGTGGGGTGAGGCCGAGTGGTGTGACTATGGCTAGCTTACTTAAAGTGTGTGGCGAAAGTGGGCTCGAGAAACCTGGAATGTGTGTTCATGCTTTTGTACTTGCATTAGGCATGGGCGATGATGTTTTTGTGGTTACTTCATTGGTTGGTATGTACTGTAATGCGGGGGATACTGACCGTGCTTTTCTGGTTTTCAATAGCATGCAAACTAGAAGCTTGATTTCATGGAATACTATGATTTCGGGATGTGTTCAAAATGGTATGGTGCCTGAATCTTTTTCTCTTTTTCATAGACTGATCGAAAGTGGTGACGGGTTTGATTCTGGGACCTTGGTGAGTCTTATTCGTGGATGTTCTCAGACATCTGACTTGGAAAAGGGAAAAGTCATCCATTCTTGTGTCATTAGAAAAGGACTTGAATCAAATACAGTTTTATCCACTGCAATTGTTGACATGTATTCTAAGTGCGGTGCCATAAAACAGGCAACTAATGTTTTCAGAACAATGGAAAAAAGGAATGTAATTACTTGGACTGCTATGCTTGTGGGTTTATCACAAAATGGCTATGCAGAGGATGCCTTGCAGTTATTCTGTCAGATGCAAGAAGAAAATGTGGCTGCCAATTCTGTCACTCTTGTTAGTCTCTTGCATTGTTGTGCTCACCTAGGGTCTCTCAAGAAAGGAAGGAGTGTGCATGCTCATTTGATCCGTCATGGTTATGCATTCAATGCTGTTAATATCTCAGCCTTGATTGATATGTATGCCAAGTGTGGTAAAATTCATTCTGCCGAGAAGCTATTCTATAAGGGATTCCATTTAAATGATATTATACTCTGTAACTCTATGATCACGGGTTATGGAATGCACGGCCAAGGACATCAGGCTCTTGGTGTCTATGATAGAATGATCGACGAAAGGCTCAAGCCAAACCAAACTACATTTGTTTCTCTGCTAACAGCATGCAGTCACTCGGGCCTCGTTGAAGAGGGTAGGATTTTGTTCCGCTCTATGGAAAGAGATCATAACATTAAGCCTAGTGACAAACACTATGCTTGTTTTGTCGATCTTCTTAGTCGAGCAGGCTGTCTTGAGGAAGCAGATTCATTGGTGAAACAAATTCCCGATAAACCGAGCACGGATGTACTCGAAGCTTTGCTCAGTGGTTGCAGAATCCATAAAAATATTAACATGGGAATACAGATTGCAGATAGATTAATTTCTCTAGATTACTTGAACACGGGAATTTACATAATGCTGTCAAATATATATTCTGAAGCAAGAAGATGGGAGTCGGTTAATCACTTAAGGGGACTCATGAGGACAAGGGGCCTGAAGAAAACACCTGCTTTTAGTTTAATTGAAGTAGGTAACCAAGTATACACATTTTTTGCTGGTGATGATTCACATCCTGGTTGGGGAAATATTAAGCAGTTGTTAGAAAATATGAGGCTTGAGGTGGAGGCTTCTGGTTATGTTCCTGATACCAGTTGTGTTCTTCGCGATGTAAATGAATCAATGAAGATTCAGTTGCTATGGGGACATAGTGAGAGATTAGCTATAGCATTTGGTCTTCTAAACACGTCATACGGAAGCTTGATTAGAATCACAAAAAATCTTCGAGTTTGTGTTGACTGTCATACTGTCACCAAATACATATCAAAAATAGTCAAGAGGGAAATTATCGTTAGGGATGCTAACCGTTTTCATCACTTTGTTAATGGGGAATGCTCTTGTAATGATTACTGGTGA 2448 0.4077 MPLSYFNIAKSSTFCSYRLIHKAAPFSTIQHASLFNQQHSSIFSSLLREFSNTLIHVKSIHAQIIRNCVSTQHFLATKLIKAYSDLGFLNSAYKVFDQFPHPETALCNAMMGGFLKNREYEEVPRLFKMMGSCDIGVNSYTSVFALKACTVLLEKEIGMEVVRMAVRKGFHLHPHVGSSVINFLVKSGDLDEARVVFDGMPERDVVCWNSIIGGYVQECLFKEAIQMFVEMIGCGVRPSGVTMASLLKVCGESGLEKPGMCVHAFVLALGMGDDVFVVTSLVGMYCNAGDTDRAFLVFNSMQTRSLISWNTMISGCVQNGMVPESFSLFHRLIESGDGFDSGTLVSLIRGCSQTSDLEKGKVIHSCVIRKGLESNTVLSTAIVDMYSKCGAIKQATNVFRTMEKRNVITWTAMLVGLSQNGYAEDALQLFCQMQEENVAANSVTLVSLLHCCAHLGSLKKGRSVHAHLIRHGYAFNAVNISALIDMYAKCGKIHSAEKLFYKGFHLNDIILCNSMITGYGMHGQGHQALGVYDRMIDERLKPNQTTFVSLLTACSHSGLVEEGRILFRSMERDHNIKPSDKHYACFVDLLSRAGCLEEADSLVKQIPDKPSTDVLEALLSGCRIHKNINMGIQIADRLISLDYLNTGIYIMLSNIYSEARRWESVNHLRGLMRTRGLKKTPAFSLIEVGNQVYTFFAGDDSHPGWGNIKQLLENMRLEVEASGYVPDTSCVLRDVNESMKIQLLWGHSERLAIAFGLLNTSYGSLIRITKNLRVCVDCHTVTKYISKIVKREIIVRDANRFHHFVNGECSCNDYW* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2935 815 Gene3D Tetratricopeptide repeat domain 442 689 IPR011990 GO:0005515
Psa7g2935 815 Gene3D Tetratricopeptide repeat domain 32 156 IPR011990 GO:0005515
Psa7g2935 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Psa7g2935 815 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 51 803 - -
Psa7g2935 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Psa7g2935 815 Gene3D Tetratricopeptide repeat domain 157 257 IPR011990 GO:0005515
Psa7g2935 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Psa7g2935 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 304 IPR002885 -
Psa7g2935 815 Pfam E motif 625 687 IPR046848 -
Psa7g2935 815 Pfam PPR repeat family 508 555 IPR002885 -
Psa7g2935 815 Pfam PPR repeat family 203 250 IPR002885 -
Psa7g2935 815 Pfam PPR repeat family 405 453 IPR002885 -
Psa7g2935 815 Pfam PPR repeat 307 336 IPR002885 -
Psa7g2935 815 Pfam PPR repeat 278 304 IPR002885 -
Psa7g2935 815 Pfam PPR repeat 481 501 IPR002885 -
Psa7g2935 815 Pfam PPR repeat 107 134 IPR002885 -
Psa7g2935 815 TIGRFAM PPR: pentatricopeptide repeat domain 511 543 IPR002885 -
Psa7g2935 815 TIGRFAM PPR: pentatricopeptide repeat domain 278 305 IPR002885 -
Psa7g2935 815 TIGRFAM PPR: pentatricopeptide repeat domain 408 441 IPR002885 -
Psa7g2935 815 TIGRFAM PPR: pentatricopeptide repeat domain 206 239 IPR002885 -
Psa7g2935 815 TIGRFAM PPR: pentatricopeptide repeat domain 307 336 IPR002885 -
Psa7g2935 815 TIGRFAM PPR: pentatricopeptide repeat domain 107 138 IPR002885 -
Psa7g2935 815 TIGRFAM PPR: pentatricopeptide repeat domain 179 206 IPR002885 -
Psa7g2935 815 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 51 803 - -
Psa7g2935 815 Pfam DYW family of nucleic acid deaminases 723 815 IPR032867 GO:0008270
Psa7g2935 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Psa7g2935 815 Gene3D Tetratricopeptide repeat domain 258 371 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2935 Psa-Chr7 209998743 210001925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2935 40 815 Glycoside Hydrolase AT3G49170 35.057 5.53e-151 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2935 - - gmx:100819857 1266.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g2935 7 209998743 210001925 Psa7g2935 7 209998743 210001925 ECH