Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2924 ATGGACTCACCGGTTGATTTATCGCCCGCTAAACGCTCAGCTTCAACTGGAACTTCATCTGAGGAAGGAGGCAAAAAACTTAGATTATCAAGTGGCAGCTTACCACATTCACATGTTAATGCGGTAGATTACAAAAATCTACATGCCATCTCAGATCGCATAGATTGTTCAGAGAGCAGAAAGTTTGGAAGCGTGACAAAGGATATTGAAGCCCTTATGACCCAAAGAATGCAAATATTGAGCCCTTACTTCTCAAAATATCCTAGACTTGCCAATCCATTATTGAAAGCGGTGACAAATCATGATGAAGAGAGTCACAACTCAGAAAGTAAGAAAGTTACTGGTATGTCACATGAAAATGTCATGGGTTTGGAAAGGGGGCACATTGAAAAGGATGTTTTGACACCAAGAAAAGAAATGGATGTTCCTGCAGCACCAACTGTTGTTATCATTGATTCAGATGAGGAAGATGATAGGGATCAAAAGTATTTTCTTCCGTTTCAAAAAGTTGTTTTGCCGAAACCAGTTCAGTCTCCCGCGTTAAAAACGATCGGCTATCATGCTCCCATTGCTTATCATAAAGAAAGTGCCGATCTGAAATTTGAAACAAGTCTGCATGCCAAAGATAACACACAGAAATATAAAGATGTTTATGTTGGTGTACACGAGGAAGATGATAATAAGATTGATTCTGAAACAACTTTGTCTCCTAAAGATAATACAAGCAAAGATAAAGGTGTTTATGTTGGTGCACATGAGGAGGTAGATAATAAGGTTGATGCTGAAACAAGTCTTCCTCCTAAAGATAACACAAGCAAAAATAACGGTGTTTATGTTGGTGTACAAGGAGAAGAAGATAATAAGGTTGATTTTGAAACAAGTCTGCCTCCTAAGGACAACACAAGGAAATATAAAAGTGTTTATGTTGGTGTACATGGGGAAGAAGATAATAAGGTTGATGCTGAAGACGAGAGGCTAGAAGATGTTTGGAGGGAGATGTATATGGCAATAGAAACTTCTAAAGATGTTTCTGCAGATCATCCACCCGAAGAAGAAGGAAAAAAAGATGCTGACTGTGATCACTCTTTTGTTTTAAAAGACGATCTGGGTTATGTTTGTCGCGTTTGTGGGGTTATTGATAGAGGAATTGAAACCATATTTGAGTTCCAGTACAAGGTTAAAAGGAGCACAAGAACTTACATGTCCGAATCCTGGAATGGCAAAGCAAAAGATGATATATTTGAAGCTAAGATTGCTGAAGATGATCTCACGGTAACTGAAATTTCAGCACATCCTAGGCATGCAAATCAAATGAAACTGCACCAAGTTGAAGGATTCAATTTTCTTGTCAGAAACCTGGTGGGGGACCATCCTGGGGGATGCATTCTGGCTCATGCTCCAGGATCTGGGAAGACTTTCATGATTATCAGTTTCATACAGAGTTTTCTAGGAAAGTATCCCTATGCAAGGCCTCTAGTGGTGCTTCCTAAGGGAATACTGTCGACTTGGAAAAAAGAATTTCAGACATGGCAAGTGGAAGATGTACCACTCTATGACTTTTACTCTGTGAAGGCTGAAAGTAGATCACAGCAATTGGAAGTCTTAAAACAATGGGTGGATCACAAGAGTATCCTTTTCTTAGGATACAGACAGTTCACTTCCATTGTCTGTGATAACTGCAATAATAATGTATCAATGTCTTGCCAAGAGATATTGCTTAAGGTTCCCTCAATTCTCATTTTAGATGAGGGACACACTCCCAGGAATGAGAATACTGATACAGTACAGTCCCTTGCAAGAGTACAAACACCAAGAAAAGTTGTACTGTCTGGAACCCTATATCAAAATCATGTCAAGGAGGTATTTAATGTATTGAACCTTGTTCGCCCAAAGTTTAAATTGATGGAATCGTCCAAGCCTATTGTCCGGCGCATTAAGAGTAGGATCCATATACCCGGTGTGAATGACTTTTGTGATTTGGTTGAAAACACTTTGCAGAAGGACCCGGATTTTAAAAGGAAAGTGGCTGTTATACATGATTTGCGGGAGATGACCAGTAAGGTACTGCACTACTATAAAGGGGATTTTCTTGATGAGCTTCCTGGCCTAGTTGATTTTACTGTGGTGCTCAAACTTACACCTAGACAGATGCATGAACTTGATAAAGTAAAGAGGATGTATGGAAAGTTCAAGATGTCTTCTGTAGGTAGTGCAGTATATCTGCACCCAAAATTGAAACCAATTGCAGAGAAATGTGGTGAAAATTCTATATCTGATGATATAATTGATGATCTAATAGCGAACCTAGATGTCAGAGATGGAGTAAAATTAAAATTCTTTCGCAATATGCTGAACCTATGCGAATCAGCTGGGGAGAAGCTTTTGGTGTTCAGTCAATATCTCTTGCCTTTAAAATGTTTGGAACGTTTAGCTATGAAATGGAAAGGCTGGAGTGTTGGCAAAGAAATTTTTGTAATTTCAGGAGCATCATCCACTGAAGAAAGGGAGTTTTCTATGGAAAAGTTTAACGGTTTGCCTGAGGCCAAAATATTTTTTGGGTCAATTAGAGCATGTGGCGAGGGTATATCGTTGGTCGGGGCATCCCGTGTTATCATCTTGGATGTCCCTCTCAACCCCTCTGTTACTCGTCAAGCAATTGGCCGTGCTTTCCGGCCAGGCCAGAAAAGGAAAGTGTTTGTGTATCGATTGATAGCTGCTGACTCTCCAGAAGAGGAAGACCACAATACTTGTTTCAAGAAGGAGTTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACAGAGCTTTTGAAGTTGAGACACTTGATGTGAAGGAATGTGGTGATCTGTTTCTAGAAAGTCCATTGTTAGGGGAAGATGTAAAAGCTCTGCATAAAAGGTAA 2910 0.3955 MDSPVDLSPAKRSASTGTSSEEGGKKLRLSSGSLPHSHVNAVDYKNLHAISDRIDCSESRKFGSVTKDIEALMTQRMQILSPYFSKYPRLANPLLKAVTNHDEESHNSESKKVTGMSHENVMGLERGHIEKDVLTPRKEMDVPAAPTVVIIDSDEEDDRDQKYFLPFQKVVLPKPVQSPALKTIGYHAPIAYHKESADLKFETSLHAKDNTQKYKDVYVGVHEEDDNKIDSETTLSPKDNTSKDKGVYVGAHEEVDNKVDAETSLPPKDNTSKNNGVYVGVQGEEDNKVDFETSLPPKDNTRKYKSVYVGVHGEEDNKVDAEDERLEDVWREMYMAIETSKDVSADHPPEEEGKKDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSESWNGKAKDDIFEAKIAEDDLTVTEISAHPRHANQMKLHQVEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMIISFIQSFLGKYPYARPLVVLPKGILSTWKKEFQTWQVEDVPLYDFYSVKAESRSQQLEVLKQWVDHKSILFLGYRQFTSIVCDNCNNNVSMSCQEILLKVPSILILDEGHTPRNENTDTVQSLARVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFKLMESSKPIVRRIKSRIHIPGVNDFCDLVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQMHELDKVKRMYGKFKMSSVGSAVYLHPKLKPIAEKCGENSISDDIIDDLIANLDVRDGVKLKFFRNMLNLCESAGEKLLVFSQYLLPLKCLERLAMKWKGWSVGKEIFVISGASSTEEREFSMEKFNGLPEAKIFFGSIRACGEGISLVGASRVIILDVPLNPSVTRQAIGRAFRPGQKRKVFVYRLIAADSPEEEDHNTCFKKELISKMWFEWNEYCGDRAFEVETLDVKECGDLFLESPLLGEDVKALHKR* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2924 969 MobiDBLite consensus disorder prediction 1 35 - -
Psa7g2924 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 657 IPR027417 -
Psa7g2924 969 CDD SF2_C_SNF 776 904 - -
Psa7g2924 969 SMART ultradead3 434 644 IPR014001 -
Psa7g2924 969 MobiDBLite consensus disorder prediction 9 26 - -
Psa7g2924 969 PANTHER PROTEIN CHROMATIN REMODELING 35 35 262 - -
Psa7g2924 969 PANTHER PROTEIN CHROMATIN REMODELING 35 261 969 - -
Psa7g2924 969 Pfam Helicase conserved C-terminal domain 780 892 IPR001650 -
Psa7g2924 969 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 35 262 IPR044567 GO:0080188
Psa7g2924 969 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 261 969 IPR044567 GO:0080188
Psa7g2924 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 931 IPR027417 -
Psa7g2924 969 Gene3D - 703 956 IPR027417 -
Psa7g2924 969 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 779 947 IPR001650 -
Psa7g2924 969 SMART helicmild6 808 893 IPR001650 -
Psa7g2924 969 Pfam SNF2-related domain 458 718 IPR000330 GO:0005524|GO:0140658
Psa7g2924 969 Gene3D - 407 655 IPR038718 -
Psa7g2924 969 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 452 631 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2924 Psa-Chr7 209389477 209398084 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2924 790 921 RAD5 or RAD16-like Gene Family AT5G43530 36.364 1.19e-14 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa7g2924 SNF2_N 1.1e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2924 K10875 - gmx:100795356 1180.62