Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2910 ATGCCAGGGCCTAGTTCTAACGGCACTGATATGAATCATCAGTCTTCCTTGAATCACGTGCAAAATTCAGTAGATTTTCGACTGTCAGATTATAGGGGGTCTTCTGGTGAGACTGCTTGTTTACGTGGTAGTGGTCCTAATGTGAGCTTTAATGGCTGGAATACCGGTGAACACAGTTCTGGACTGAATCTAATCAACCAAGTCAACGATGATGCTCTAATATCAGAACATAGATTGTCTTCTTCATGTAGTGCTATTGCCGAAGATGGTCAAAGACCTGAAGAAAGGCAATTACTTGGGAACCAATCCAGAATTCATCCCTCCTTTTTGCAAGGTTCTAGCTCTAATCATACAGTTCAGAATATTAATCTCGGTATGGGGCACATTGGCAACTCTTCTGACCGCGGGAAAGGAAAAGAAACTGGTAGTGGTGTTAATAACAACAATCCATGTGGGTTAGATGGAGAGAAGACATCACTTGGCAGCTCTTCATTCAATCATACAGGAGCTTCGTCTGCAAGCTCTGGATATATGGCTTGGGGAGATAGCGGTAGTTCAAGTTCTTCTTTAGCTAATTGGGGTCCTTCCTGCAAGAGAAAGACCCTTGAAGGTAGTTCTATGCAACTATGTACTGGAGGAAGTTCGAGTTCTCTTGTACAATCTGAAAATGGTTACTGGCCTACTGATTCTGTTGATCTTAATGTTCCTGGAAGCTTAGGTGATCTGTCACCTTTAGATGATTTTCGTGTTACTAGTCCTCCATTTCAGCAGAATACAAGAAATGAAGTGAGACAAGAAGCTTCAAATATGTTTCCATCAATGATAGGTGTAGCGGAAAATGTGGAAAGGCCTCTACGAAACTTTGATAGGAGAATAACCCATTTACAGCATCCGGAATCTGTACCTCTCAATTTAACATCAACAGGGAGTGCTAGACATCATAATTATCCTTCTCCACATCAAACACCTGGCTCTCTCTCATTTAGTGAGTCCTTGGATTTGAGGTTAACAGCTGGAGTAACAGCTGCTAATTCTGCTGTGCCACAAACCCAGTCACCTTCACTGCACATGCATCCTTTTCCGTGGAATAGAGCTGCTAATCCTAGAGTGGCCAGATCATCAAGTTCTTATAACTCGGGAGAAAGAGCAGTACGCGAAGATTTTAACTTAAGAATCTTCCCAAGAGATAGTACCGAGCATCCCATGAATGTGCCTGCATCTTCAGGACATGAACCTGCAGGTTGGTATACATCCTCGAATAATGTGAACAATGCCGGGGGTATACCTCCTCCCTCCTGGATTGGATCTAGTTCAAATGTTCACTCATTACCTAATCCCAGCTGGACTTTTAACCATGAAGTTCCAACAGAAAATCTACAGAGAGTTTCAGAGTTCAGTCCTTGGTCCCTTTTTCCATCAATCAGCTCAGCATCTGGTGCTCATAATGGCCATTCCCCCTCTACTTCCAGCCCTCTTTCTTTTTCTCAGGGTTCTAGCAGCAGTCAACCATATCCAAGAACATCATATTTGATGGAAAGAAGGGGGGATGCACTCCCTGCTCCTCATTCACTGCGAACATTACCCGCTGACAATGAGGGGAGACGCCGGCTCATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGAGAGCTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCCTATATCATGGCATGGCTGAAATGCACGATAGACACAGAGAAATGCGCCTTGATGTTGATAACATGTCATACGAGGAATTGTTGGCACTGGGGGAGCGTATAGGAGATGTAAGCACTGGACTGAAAGAAGATATAATTCATAAGTTGATGAAACAGCGATTTTACATGTCTCCGATGACAGAGTCTTCTTCTGATCTCGAACCTTGCTGTATCTGTCAGGAGGAATATACTGCTGGACAGAAAATTGGTTCGCTAGATTGTGGGCATGAGTTCCACAGTAACTGCATCAAGCAGTGGCTAATGCAGAAGAATATGTGCCCAATTTGCAAAACAACAGCCTTGGCCACGTGA 2046 0.4384 MPGPSSNGTDMNHQSSLNHVQNSVDFRLSDYRGSSGETACLRGSGPNVSFNGWNTGEHSSGLNLINQVNDDALISEHRLSSSCSAIAEDGQRPEERQLLGNQSRIHPSFLQGSSSNHTVQNINLGMGHIGNSSDRGKGKETGSGVNNNNPCGLDGEKTSLGSSSFNHTGASSASSGYMAWGDSGSSSSSLANWGPSCKRKTLEGSSMQLCTGGSSSSLVQSENGYWPTDSVDLNVPGSLGDLSPLDDFRVTSPPFQQNTRNEVRQEASNMFPSMIGVAENVERPLRNFDRRITHLQHPESVPLNLTSTGSARHHNYPSPHQTPGSLSFSESLDLRLTAGVTAANSAVPQTQSPSLHMHPFPWNRAANPRVARSSSSYNSGERAVREDFNLRIFPRDSTEHPMNVPASSGHEPAGWYTSSNNVNNAGGIPPPSWIGSSSNVHSLPNPSWTFNHEVPTENLQRVSEFSPWSLFPSISSASGAHNGHSPSTSSPLSFSQGSSSSQPYPRTSYLMERRGDALPAPHSLRTLPADNEGRRRLISEIRQVLIAMRRGESLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALGERIGDVSTGLKEDIIHKLMKQRFYMSPMTESSSDLEPCCICQEEYTAGQKIGSLDCGHEFHSNCIKQWLMQKNMCPICKTTALAT* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2910 681 Pfam Ring finger domain 634 675 IPR001841 -
Psa7g2910 681 ProSiteProfiles Zinc finger RING-type profile. 634 675 IPR001841 -
Psa7g2910 681 SUPERFAMILY RING/U-box 619 678 - -
Psa7g2910 681 CDD RING-H2_TTC3 633 675 - -
Psa7g2910 681 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 681 IPR045191 GO:0061630
Psa7g2910 681 SMART ring_2 634 674 IPR001841 -
Psa7g2910 681 MobiDBLite consensus disorder prediction 130 150 - -
Psa7g2910 681 MobiDBLite consensus disorder prediction 136 150 - -
Psa7g2910 681 MobiDBLite consensus disorder prediction 479 505 - -
Psa7g2910 681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 679 IPR013083 -
Psa7g2910 681 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2910 Psa-Chr7 208558973 208570123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2910 53 681 C3H Transcription Factor Family AT2G15530 37.223 3.46e-102 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2910 - K19041 gmx:100809024 1032.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g2910 7 208558973 208570123 Psa7g2910 7 208558973 208570123 ECH