Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2908 ATGACAAACAAGGGTATGAGTGTAGATCGTGATCAATCTGTCAATGCCAATTTCATGTGGGAAAATCAACCCTGGGGTGATCATAGAAATTCAGAAAACATAGGTGAGAGTAGCAAACAAAAGTTAGATAAGAAACCAATGAATAAAAAAGAAGGTATTAATGAAGGAGGAGTTTTCATGAATAGAAAACGAAGTCGAGGTGGAGTTGTGATTAGAACAGAGAACAACATTACAAATGCAGAAGACAAAGATGGAAAGTACCGCAACTCTAATAAGAAAATGCATATATTGACTGAGAGAGAAAGGAGAAAGAAAATGAAGAATATGTTCGCCAACCTTCATGCCTTACTTCCTAAATTGCCTTCTAAGGCTGATAAATCATCAATTGTGGATGCGGCAGTGATAGAAATTATCAATTTAAAAAAAGTTGTTGAACAACTAGAAAAAAAGAAGCAGGAAAAGCTCAAATTTGTATCCAAATTTGGGACTGAGTCATCATTTAAGAGGAACTCACACTGGCATCCCCATGAATCAGGGGAAGCAATTGTAAATGTTCAAAGATCCTTAAGTTATAATAATAACTTTCCTACTCACGCAATAGAGTCTTCACCACAACAAGTAGGTTTCCAAACATGGTATACTCAAAATGTTGTCTTGAACATTTGTGGCGCTGAAGCACAATTTTGCATTTGTACACCTAAAAAGTCGTGTCTCTTAACAACAATTACTTCTATGTTGGAGAAATATACGATTGATGTTGTATCTGCAAACATTAAGTTCAATGAAAATGGACATTTCTACCTGATTCAAATTCAAGCGAAACAACGTTCACATGACACAAATTCAATGGAGGAAACTTACATGCAAGCGGCTAGAGAAATTCAAATGTGGATCTCTTAA 900 0.3544 MTNKGMSVDRDQSVNANFMWENQPWGDHRNSENIGESSKQKLDKKPMNKKEGINEGGVFMNRKRSRGGVVIRTENNITNAEDKDGKYRNSNKKMHILTERERRKKMKNMFANLHALLPKLPSKADKSSIVDAAVIEIINLKKVVEQLEKKKQEKLKFVSKFGTESSFKRNSHWHPHESGEAIVNVQRSLSYNNNFPTHAIESSPQQVGFQTWYTQNVVLNICGAEAQFCICTPKKSCLLTTITSMLEKYTIDVVSANIKFNENGHFYLIQIQAKQRSHDTNSMEETYMQAAREIQMWIS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2908 299 MobiDBLite consensus disorder prediction 32 47 - -
Psa7g2908 299 CDD bHLH_AtbHLH_like 95 144 IPR045239 -
Psa7g2908 299 PANTHER - 15 297 IPR044278 GO:0003700|GO:0006355|GO:0009960
Psa7g2908 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 140 IPR011598 GO:0046983
Psa7g2908 299 SMART finulus 96 146 IPR011598 GO:0046983
Psa7g2908 299 Gene3D - 80 156 IPR036638 GO:0046983
Psa7g2908 299 PANTHER TRANSCRIPTION FACTOR BHLH95 15 297 - -
Psa7g2908 299 Coils Coil 130 150 - -
Psa7g2908 299 MobiDBLite consensus disorder prediction 24 47 - -
Psa7g2908 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 154 IPR036638 GO:0046983
Psa7g2908 299 Pfam Helix-loop-helix DNA-binding domain 92 135 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2908 Psa-Chr7 208374824 208376624 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2908 78 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 32.806 2.40e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa7g2908 HLH 5.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2908 - - mtr:MTR_4g085700 333.954