Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2898 ATGCGTGGCTCTTTACAACCCTTGGATTTAGGGATTCAGATTCCCTACCACTTCAGGTGTCCAATCTCTCTTGAGCTTATGACAGACCCTGTTACCGTCTCCACCGGTCAAACTTACGACCGTAACAGCATCGAGTCATGGGTGAACACCGGCAACACCACGTGTCCGGTCACTAGGGCTAATCTCACCGATTTCACGTTCATCCCTAATCACACTCTTCGCCGTTTGATTCAAGAATGGTGCGTCGCAAACCGCGCTTTTGGTGTTCAGCGTATTCCTACTCCCAAACAGCCAGCAGATTCTGCACTGGTTCGTTCTTTGCTTAACCAGTGTTCTTCCCATTCTGCCCCTACTCAAATGAGGCTTAACTCGCTTCGTCGACTCAGGTCACTCGCTCGTGACTCGGATTATAACCGTTCTCTGATTGGTTCTCTCAATGTTCGTCATGTTTTGTTACCTATTGTTTTCGACTACAACGGTTTAGATGAGATGAAATATGAGTCGCTCGGTTTGCTTGTTCTTTTCCCACTCAGTGAGTCAGAATGCAGTTCAGTTGCTTCCGATTCGGATAAGATTAACTACCTAACGAGTCTTCTTTCCCATTCTTTGTTTGATGTCCGAGTCAACTCGGCGGCGCTCATTGAGATCGTCGTCGCGGGAACTCACTCGGCGGAGATTAGATCTCAGGTGAGCAATGTCGACGGGATCTACGACGGCGTGATTGAGATACTCAAAAATCCGATCTCGTATCCGCGCGCGCTTAAGATTGGAATCAAGGCGTTGTTCGCGCTCTGCCTTGTGAAACAGACGCGTCACCGTGCTGTGGCTGCCGGTGCGCCTGCGGTACTTGTTGATAGGCTCGCTGATTTCGAGAAGTGTGACGCGGAGAGAGCTTTAGCGACGGTGGAGCTGTTGTGCCGTGTTCCGGATGGTTGCGCGGCTTTCGCTAGTCATGCGCTTACGGTGCCGATGCTTGTGAAGATAATACTCAAGATTTCGGATCGTGCGACGGAGTACGCTGCCGGAGCGTTAATGGCGCTGTGTTCGGAATCGGAACGGTGTCAGAGAGAAGCGGTTACGGCAGGGGTTTTGACCCAGCTTTTACTTCTGGTACAGAGTGATTGCACGGAGAGAGCCAAGAGGAAGGCGCAACTGTTGCTGAAATTACTTCGGGATTCGTGGCCTCAAGATTCCGTCGGAAATTCCAACGATTTTGCATGCAGTCATTTTGACTGA 1236 0.5049 MRGSLQPLDLGIQIPYHFRCPISLELMTDPVTVSTGQTYDRNSIESWVNTGNTTCPVTRANLTDFTFIPNHTLRRLIQEWCVANRAFGVQRIPTPKQPADSALVRSLLNQCSSHSAPTQMRLNSLRRLRSLARDSDYNRSLIGSLNVRHVLLPIVFDYNGLDEMKYESLGLLVLFPLSESECSSVASDSDKINYLTSLLSHSLFDVRVNSAALIEIVVAGTHSAEIRSQVSNVDGIYDGVIEILKNPISYPRALKIGIKALFALCLVKQTRHRAVAAGAPAVLVDRLADFEKCDAERALATVELLCRVPDGCAAFASHALTVPMLVKIILKISDRATEYAAGALMALCSESERCQREAVTAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSVGNSNDFACSHFD* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2898 411 CDD RING-Ubox_PUB 18 59 IPR045210 -
Psa7g2898 411 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Psa7g2898 411 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Psa7g2898 411 Gene3D - 94 401 IPR011989 -
Psa7g2898 411 SUPERFAMILY ARM repeat 103 390 IPR016024 -
Psa7g2898 411 SUPERFAMILY RING/U-box 12 89 - -
Psa7g2898 411 PANTHER WDSAM1 PROTEIN 4 407 IPR045185 GO:0061630
Psa7g2898 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Psa7g2898 411 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 407 - -
Psa7g2898 411 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2898 Psa-Chr7 207679755 207682070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2898 1 405 U-box Gene Family AT1G49780 64.649 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2898 - - var:108341190 647.891