Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2877 ATGAACTACTCTCCTACCTCCCTCACCTCCGACCAAGAACTCTCCGTCATCGTCGCCGCTCTAACCAACGTCGTCTCCGGCTCAACCTCAACCTCAACCTCCACCTCCACCGCTATTTCAATACCTGAATTTCGCAACCCCGATCCATTAGTTCCGTCCGCAACCATGGAAACCTGCCGTGAATGCAACATAGCAGGATGTTTAGGATGCAATTTCTTCCCGGAAGAGAACAAGAAAAAACAAAAGAGAGCAAAAAAGAAGTACAGAGGAGTGAGACAGAGACCATGGGGAAAGTGGGCTGCTGAGATTCGTGACCCGAGACGCGCCGCACGGGTCTGGCTCGGAACTTTCACCACGGCGGAGGAAGCTGCTAGAGCTTACGACAATGCCGCCATCGAGTTCCGTGGACCCAGAGCCAAGCTCAATTTTCCACTAGTCGATGAATCGCTTACAAAGCAAGTCGAGGAGCCAGAAGTGGTTGTTCCTAGTACCGAGAATGTCAAGGATGAGAATTTGAATCAAGAAATGCAAATGGATTGTGATTTTTGGGATAGGATTGGGGAAGCTGATTTTCAGCAGCTTATGAGGTTTATGGATTTTGGCGGAGATTCTTCTGATTCAAGAACAGGAAGCACTTTTTAG 642 0.4891 MNYSPTSLTSDQELSVIVAALTNVVSGSTSTSTSTSTAISIPEFRNPDPLVPSATMETCRECNIAGCLGCNFFPEENKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFTTAEEAARAYDNAAIEFRGPRAKLNFPLVDESLTKQVEEPEVVVPSTENVKDENLNQEMQMDCDFWDRIGEADFQQLMRFMDFGGDSSDSRTGSTF* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2877 213 SUPERFAMILY DNA-binding domain 87 145 IPR016177 GO:0003677
Psa7g2877 213 ProSiteProfiles AP2/ERF domain profile. 87 144 IPR001471 GO:0003700|GO:0006355
Psa7g2877 213 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
Psa7g2877 213 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 209 - -
Psa7g2877 213 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700|GO:0006355
Psa7g2877 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 2 209 - -
Psa7g2877 213 SMART rav1_2 87 150 IPR001471 GO:0003700|GO:0006355
Psa7g2877 213 CDD AP2 88 144 IPR001471 GO:0003700|GO:0006355
Psa7g2877 213 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Psa7g2877 213 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2877 Psa-Chr7 206489150 206490503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2877 3 157 AP2-EREBP Transcription Factor Family AT4G34410 45.641 9.72e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa7g2877 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2877 - - gmx:100820426 265.774