Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2831 ATGGCTAACTCAAGTAGCAGATTTACACCCACAATGTCCGAAGACTCCTTGGAGCTGAAGGGACAAAATATTACTGAATCAAATGCAAGCATAATTCAGTGTCCTTTAAGCCAGCAACACCGTAGCTCTTTAGATGGCCCAGTTTCTATCCTTTGGGATATTGAAAATTGTCCTGTTCCGAGTGATGTACGCCCAGAAGATGTAGCTGGTAATATAAGAATGGCTCTGCAAGTGCATCCGGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTACGGGGATTTCAACGCTTTCCCCAGGCGACTAAGAGAGGGTTGTCAGAGAACTGGTGTTAAACTCATTGATGTTCCCAATGGGAGAAAAGATGCTGCTGACAAAGCGATTTTGGTTGACATGTTCTTATTTGCTCTTGACAATCCTCCACCGTCCTCTATCATGCTAATCTCTGGAGATGTTGATTTTGCTCCAGCGCTCCATATTCTTGGTCAACGGGGATACACTGTCATTCTTGTCATCCCTGCTGGGGTTGGTGTTTCATCTGCCTTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTGTTGTAGCTCGTGGAGAAGGTTTTGTCCCTCCCTCAAAGTTATTGGTGCAACCTCGTGGAAGTTCAGTTGAGCTTGCTGGATATTTGATGGGATGTCATATCAATGATAGTGCGGATGGACAAAATGAAGAGGAAGCGATAGTTTATAGAGGGATGTCACAGAGCTATTACAACTCAAGAGAGTTTTCTCTGGTATCACAATCTCTATCTGAATATAACCCACCACACATGTCTTACTTGCCAACATCTACGAGATCATATAGCCTTCCATCTGGATTGAATGATGTTGCTGGAGGACCTATGCCTTCTAGCGACAATACTGAATGCCAGGTATGGGTACAGCCTGGAGATTTAAATGGTCTCAAGGGTCAGTTAATAAGGTTGCTCGAACTATCTGGCGGAAGCCTGCCCCTGGTCCGAGTGCCAGCAGAGTACCAGAAACTTTACAGTAAGCCACTTTTTATATCTGAATATGGAGCATTTAAGTTGGTCGATCTTTTCAAAAAAATGGAAGATGCCATTTCTGTGGAAGGGAAAGGGGCTCGCAGATTTGTGTCTCTCAGAAACAAGAAAGGAGGCACAAGCGCTCCTCCGCTGTCTCTTGCAAAAAGAGATAAAAAGGGAAAAGGGACACTGGAAGAGACTGCAAATGCTGTCATCGGCGGCTGCTCTTCAGATGAATTGTCAGATGAAGAAAGAGTAGTCGTAGAAGAACACGATGGAAGAAATTTTACAGGAAAGCGTAATAAGGGGAGAGCAGCCAGATGTCAAATTGATGGGCGTGTTCTTGAGCAGTTTAAGTGCGAACTGCAGGAAATTCTTGTCAGCTACTCCTGTCGGATACTTCTAAGTTGTTTCGAAGCTGTGTACAAGCAACGATACAAGAAACAGTTGGAATATCATCAATTTGGCGTGGACAAGTTGGAGGATTTGTTGGAGAAAGTGAGTGATGTGGTAGTATTGCACGAGGAACCAGTAAGCAAGAGGAAATTCCTGTCTGCAGTTGGTGGTTAG 1593 0.4419 MANSSSRFTPTMSEDSLELKGQNITESNASIIQCPLSQQHRSSLDGPVSILWDIENCPVPSDVRPEDVAGNIRMALQVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWPVVARGEGFVPPSKLLVQPRGSSVELAGYLMGCHINDSADGQNEEEAIVYRGMSQSYYNSREFSLVSQSLSEYNPPHMSYLPTSTRSYSLPSGLNDVAGGPMPSSDNTECQVWVQPGDLNGLKGQLIRLLELSGGSLPLVRVPAEYQKLYSKPLFISEYGAFKLVDLFKKMEDAISVEGKGARRFVSLRNKKGGTSAPPLSLAKRDKKGKGTLEETANAVIGGCSSDELSDEERVVVEEHDGRNFTGKRNKGRAARCQIDGRVLEQFKCELQEILVSYSCRILLSCFEAVYKQRYKKQLEYHQFGVDKLEDLLEKVSDVVVLHEEPVSKRKFLSAVGG* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2831 530 CDD LOTUS 456 518 - -
Psa7g2831 530 PANTHER LIMKAIN B LKAP 35 525 IPR024768 GO:0005777|GO:0010468|GO:1903231
Psa7g2831 530 CDD PIN_limkain_b1_N_like 47 173 - -
Psa7g2831 530 Pfam NYN domain 48 187 IPR021139 GO:0004540
Psa7g2831 530 Gene3D - 452 522 IPR041966 -
Psa7g2831 530 Gene3D - 310 379 IPR041966 -
Psa7g2831 530 CDD LOTUS 311 380 - -
Psa7g2831 530 ProSiteProfiles OST-type HTH domain profile. 310 383 IPR025605 -
Psa7g2831 530 Pfam OST-HTH/LOTUS domain 455 518 IPR025605 -
Psa7g2831 530 Pfam OST-HTH/LOTUS domain 312 376 IPR025605 -
Psa7g2831 530 PANTHER - 35 525 - -
Psa7g2831 530 Gene3D - 47 192 - -
Psa7g2831 530 ProSiteProfiles OST-type HTH domain profile. 455 529 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2831 Psa-Chr7 202786842 202790154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2831 44 198 C2H2 Transcription Factor Family AT5G61190 43.226 1.22e-29 122