Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2809 ATGTCTCAACAAACCAGCTCCGGAGATCTGAATCCGAGCCAGAACCCAAGCCAGAACCAGAACCAGAGCCAGAACCCGAACCAGAATCCGAATCAGAACCAGAGCCAGAACGTTCAGCAGCAGCAGTGGGCGCAGCCGCATCAGTATCAGCAGCAATGGATGTCCATGCAGTATCCTGCTACTGCTATGGCTATGATGCAGCAGCAGATGATGATGTATCCACAGCATTACATGTCGTATGTTCATCCTCATCATTATCAGGCGCCGCCTCACCAGCAGCAACCGTCGCCGCCGCCGAGTACTCAGAGTCATCATGGTCATGGTCATGGCCATGGTCATCATCTTCATCACCAGCAGCAGCATCAGCAGAAACAGGTTTCTCCTGAAGAGATCAGGACGATCTGGCTTGGTGACCTTCATCATTGGATGGACGAGACTTTTCTTCATAACTGCTTTGCTCATACCGGCGAGGTTGTATCGGCCAAGGTCATACGTAATAAGCAAACTGGTGTCTCGGAGGGATATGGATTTGTCGAGTTCTATTCGCGAGGAACGGCTGAGAAAGTCCTGCAGAACTTTAATGGTGCTATGATGCCAAATACAGATCAGCCGTTTCGTCTGAATTGGGCTACGTTCAGCGCTGGCGGTGGCGGTGGTGGTGAAAGGCGTTCTTCTGAGGCTACTTCTGATCTCTCCGTTTTTGTGGGAGACTTAGCCATAGATGTTACCGATGCTATGCTGCAGGAGGTGTTTGCTAGCAGATTCTCGTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGCTCAAAAGGATATGGTTTTGTTAGGTTCGGTGATGAAAATGAAAGGACAAGGGCAATGACTGAAATGAACGGCGTTTATTGTTCTAGCAGACCTATGCGAGTCGGTGTTGCAACGCCCAAAAAAACTTACGGCAATCCACAACAATATTCTTCACAAGCTGTAGTGTTGGCTGGCGGTGGTCACTCTGCTAATGGTGCTGTGGCCCAAGGCTCCCAATCTGAAGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGAAATCAGCGATGAGGATCTCAGACAACCGTTTTTGCAATACGGCGACGTTGTCTCCGTGAAAATTCCAATCGGTAAAGGATGTGGCTTTGTTCAACTTGCTGACAGAAAGAAATGCGAAGGAGCTATTCAGGGATTGAATGGAACAGTGATCGGGAAGCAGACCGTGCGTCTTTCTTGGGGTCGCAGTCCGGGAAATAAGCATTGGAGGAATAATGACTCGAATGGAAACCATTACGGCGGGCAAGGTTACGGTGGTCACGGATACGGAGGCCATGGATATGCTGCTAGACAGAATCAGGATATAGCGATGCAACAACCTGCAGCTGCAATTCAAGGGGCTTCGTAA 1428 0.4888 MSQQTSSGDLNPSQNPSQNQNQSQNPNQNPNQNQSQNVQQQQWAQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMSYVHPHHYQAPPHQQQPSPPPSTQSHHGHGHGHGHHLHHQQQHQQKQVSPEEIRTIWLGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGVSEGYGFVEFYSRGTAEKVLQNFNGAMMPNTDQPFRLNWATFSAGGGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQEVFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGHSANGAVAQGSQSEGDSNNTTIFVGGLDSEISDEDLRQPFLQYGDVVSVKIPIGKGCGFVQLADRKKCEGAIQGLNGTVIGKQTVRLSWGRSPGNKHWRNNDSNGNHYGGQGYGGHGYGGHGYAARQNQDIAMQQPAAAIQGAS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2809 475 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 39 474 - -
Psa7g2809 475 MobiDBLite consensus disorder prediction 86 128 - -
Psa7g2809 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 310 IPR000504 GO:0003723
Psa7g2809 475 SUPERFAMILY RNA-binding domain, RBD 112 217 IPR035979 GO:0003676
Psa7g2809 475 SUPERFAMILY RNA-binding domain, RBD 229 334 IPR035979 GO:0003676
Psa7g2809 475 CDD RRM1_SECp43_like 133 213 - -
Psa7g2809 475 Gene3D - 131 211 IPR012677 -
Psa7g2809 475 Gene3D - 219 323 IPR012677 -
Psa7g2809 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 212 IPR000504 GO:0003723
Psa7g2809 475 Gene3D - 332 460 IPR012677 -
Psa7g2809 475 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 39 474 - -
Psa7g2809 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 302 IPR000504 GO:0003723
Psa7g2809 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 201 IPR000504 GO:0003723
Psa7g2809 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 353 416 IPR000504 GO:0003723
Psa7g2809 475 MobiDBLite consensus disorder prediction 106 120 - -
Psa7g2809 475 MobiDBLite consensus disorder prediction 1 44 - -
Psa7g2809 475 CDD RRM2_SECp43_like 230 309 - -
Psa7g2809 475 SMART rrm1_1 232 306 IPR000504 GO:0003723
Psa7g2809 475 SMART rrm1_1 352 419 IPR000504 GO:0003723
Psa7g2809 475 SMART rrm1_1 133 208 IPR000504 GO:0003723
Psa7g2809 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 351 423 IPR000504 GO:0003723
Psa7g2809 475 SUPERFAMILY RNA-binding domain, RBD 342 453 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2809 Psa-Chr7 201510998 201514490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2809 111 430 Eukaryotic Initiation Factors Gene Family AT4G34110 27.829 5.32e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2809 - - mtr:MTR_4g086600 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g2809 7 201510998 201514490 Psa7g2809 7 201510998 201514490 ECH