Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2761 ATGACTAGAAAGAAAGTGAAACTCGCGTTCATAACCAACGACTCTTCGAGGAAAGCAACATTCAAGAAAAGGAAGAAGGGTCTAATGAAAAAGGTGAGTGAACTTAGCACCCTTTGTGGAATCGATGCTTGTGCTATAATCTATAGTCCTTACGATCCTCAACCAGAGGTTTGGCCATCTCAACCGGGAGTCCAAAGGGTACTAAACAAGTTTAGAAGAATGCCTGAATTGGAACAAAGTAAAAAGATGGTGAACCAAGAGAGTTTTCTAAGACAAAGGATCGAAAAGGCGAAAGATCAGTTGACGAAACAAAGGAAAGATAATCGAGAAAAAGAAATGACACAACTCATGTTTCAATATCTTAGTGCAGGAAATGTAATGGATAATATAAGTATGGCTGATTTAAATGATATGGCATGGTTGATTGATCAATATTTGAAAGAGATTAATAGAAGAGTTGAAATGTTGACCAAGAATTCTCAAGGTCAAGGTCAAGGCCAAGGCCAAGCCCAAATAATGACACCACAATTACCAATGGTGGCTAATGGAGTGGCTAAGGTTGAAGAGTTGGGACAAGGGAGTCATAATGGTCAAGGGTTGGTGGATATGAATATGAATATGGATGTTAATGGTATGCAAAAGCAACCTTGGTTTATGAATTTGATGGATGGTGGTAGTGGAAATGATGCACCTCCTTTGGGAAATGTTCCTCAACAAAATGGATATTGGCCAAATCCGTTTTTTCAATGA 750 0.3867 MTRKKVKLAFITNDSSRKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDPQPEVWPSQPGVQRVLNKFRRMPELEQSKKMVNQESFLRQRIEKAKDQLTKQRKDNREKEMTQLMFQYLSAGNVMDNISMADLNDMAWLIDQYLKEINRRVEMLTKNSQGQGQGQGQAQIMTPQLPMVANGVAKVEELGQGSHNGQGLVDMNMNMDVNGMQKQPWFMNLMDGGSGNDAPPLGNVPQQNGYWPNPFFQ* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2761 249 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Psa7g2761 249 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 205 - -
Psa7g2761 249 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Psa7g2761 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa7g2761 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Psa7g2761 249 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Psa7g2761 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa7g2761 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa7g2761 249 Coils Coil 87 114 - -
Psa7g2761 249 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Psa7g2761 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2761 Psa-Chr7 197681369 197682118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2761 1 194 Type I MADS-box Gene Family AT5G48670 57.000 8.39e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa7g2761 SRF-TF 3.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2761 - - gmx:100813231 357.451