Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2760 ATGGCAGTTTTACCAACAAGTTCCTCCAGCTTGGAATTGACCATATCTGTCCCAGGTTTTGCTTCTTCACCAATCACTTTTCTCACCACATCATCATCATCATCGGGGAAAAAGTTGGACATGAACCAAGTAGCCATAGAAGAAGAATGGATGAGATTAGAAGAGGAAGAAGATACCAACGTTAATCCTCGCAAAAAACTCCGTCTAACAAAGGAACAGTCTCGTCTCCTTGAAGAAAGCTTTAGAAAAAACCACACTTTAAACCCAAAGCAGAAAGAGTGTTTGGCAATGCAGCTGAAACTCCGACAAAGACAAGTGGAGGTGTGGTTTCAAAACCGTAGGGCCAGGAGCAAGTTGAAGCAGACAGAGATGGAGTGCGAGTACTTGAAAAGGTGGTTTGGATCTCTGACAGAGCAGAACCGGAGGCTTCAAAGAGAAGTTGAGGATCTTAGGGCTTTGAAAGTGGGCCCACCCACTGTGTTATCCCCTCACAGTTCCAAACCACTTCCAGCTTCAACCTTATCCATGTGTCCTCAATGTGAACGTATCACCACCAACGCCACAGCTGCCGTCGCCGTCGACAAACATGCTAATGCCGCCGTCACTTTGTCGCCTAAAGTGTAA 624 0.4615 MAVLPTSSSSLELTISVPGFASSPITFLTTSSSSSGKKLDMNQVAIEEEWMRLEEEEDTNVNPRKKLRLTKEQSRLLEESFRKNHTLNPKQKECLAMQLKLRQRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEDLRALKVGPPTVLSPHSSKPLPASTLSMCPQCERITTNATAAVAVDKHANAAVTLSPKV* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2760 207 CDD homeodomain 63 121 IPR001356 GO:0003677
Psa7g2760 207 PANTHER - 1 199 - -
Psa7g2760 207 SUPERFAMILY Homeodomain-like 61 129 IPR009057 -
Psa7g2760 207 SMART HOX_1 62 124 IPR001356 GO:0003677
Psa7g2760 207 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Psa7g2760 207 Pfam Homeobox associated leucine zipper 120 153 IPR003106 GO:0006355|GO:0043565
Psa7g2760 207 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Psa7g2760 207 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Psa7g2760 207 Gene3D - 57 126 - -
Psa7g2760 207 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Psa7g2760 207 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 199 - -
Psa7g2760 207 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2760 Psa-Chr7 197622097 197631344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2760 37 200 Homeobox Transcription Factor Family AT1G70920 59.538 6.02e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa7g2760 Homeodomain 9.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2760 K09338 - gmx:100775341 290.426