Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2738 ATGGTTAATACGTTTTGTGAGAGAGTTTCTTCATCTGGGTATGATGATGATTTGGAGTTGTTGAATGACTCTTTGCATGAGTTTGGAGGTTGTGATGGGTCGGTGTTGTTGTCATCGCCGATTGAAAGGGTTGGTGGTAAGAATGAGAATTGTGAGGCGAAAGCTTTGGCTGCTTTGAAGAATCATAGTGAAGCGGAGAGGAGAAGGAGGGAGAGAATCAATGGCCATCTTGCTACATTGCGCGGTCTTGTGGCTTCTACTCATCAAAAGATGGACAAAGCCACATTACTTGCTAAAGTGATTAGCCAAGTGAAGGAATTAAAGAAGAATGCAATGGAAGCAAGCAAAGATTTTCTAATTCCAATGGAAACCGATGAAGTGAAAGTTGAACCATATGATATTAAACTAGGATATGGATGCATGTCTTACATGGCAACTATATGCTGTGATTACCAACCTGAGATACTGTGTGACCTTAAAAAAACACTTGATGCACTTCAACTTCAACTAGTGAAATCAGAGATGTCAACATTGGAAAGAAGAATGAAGAATGTGTTTGTATTCACATGTTGCAAAGGGGTTAATAATAGTGTTAATGTTGAAGCATGTCAAAGTATTGGGAATGTTGTTCATAAGGCACTTGGTTCTGTGTTGGAAAAGGCTTCTATGTCAATGGAATTTGCACTTACAACTTCATATCCAAACAAGAGGAGAAGAATGTGTTGA 726 0.3898 MVNTFCERVSSSGYDDDLELLNDSLHEFGGCDGSVLLSSPIERVGGKNENCEAKALAALKNHSEAERRRRERINGHLATLRGLVASTHQKMDKATLLAKVISQVKELKKNAMEASKDFLIPMETDEVKVEPYDIKLGYGCMSYMATICCDYQPEILCDLKKTLDALQLQLVKSEMSTLERRMKNVFVFTCCKGVNNSVNVEACQSIGNVVHKALGSVLEKASMSMEFALTTSYPNKRRRMC* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2738 241 Gene3D - 54 117 IPR036638 GO:0046983
Psa7g2738 241 SMART finulus 63 113 IPR011598 GO:0046983
Psa7g2738 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 109 IPR036638 GO:0046983
Psa7g2738 241 PANTHER TRANSCRIPTION FACTOR BHLH30 45 241 IPR045847 GO:0003700|GO:0006355
Psa7g2738 241 PANTHER DNA BINDING PROTEIN-LIKE 45 241 - -
Psa7g2738 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 107 IPR011598 GO:0046983
Psa7g2738 241 Pfam Helix-loop-helix DNA-binding domain 61 107 IPR011598 GO:0046983
Psa7g2738 241 Coils Coil 48 68 - -
Psa7g2738 241 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2738 Psa-Chr7 196245798 196249040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2738 49 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.784 8.73e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa7g2738 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2738 - - gmx:100804756 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g2738 7 196245798 196249040 Psa7g2738 7 196245798 196249040 ECH