Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2733 ATGGAATTCTCCAAGAAGCGCAAAACAGAAGAGAACGGCGACACCAATTCTCCTCCTCCCTCAAACGACGCCGCCGTCACAACAACCCTCACCCCAGAAGACATCCACAAGATTCTCCAACCCTTCACTCAGGACCAGCTACTAGACCTTCTTAAGTCAGCGGCCCTCCAACACCCCAACGTTCTCGACGCCGTACGCTCCGTCGCCGACCGTGATACCTCACGCCGTAAATTATTCGTCCGTGGCCTCTCAGGCGAGACCACCAGTGAAACGCTCCGTGCTGTATTCGCTGCGTACGGTGACCTAGATGAAGCAATCGTGATATTTGACAAATCGACAAGCAGGTCTAAGGGATACGGCTTCGTTGTGTTCCGACATGTCGATGGTGCTATCCTTGCCCTAAAGGAGCCGAGCAAAAAAATTGACGGAAGAATGACGGTGACGCAGCTTGCGGCGGCGGGTGCGGGTTCTACCGGCGGGGACGTTTCTGCTCGTAAGGTATTCGTAGGTAACGTTCCATTTGAAGTATCAGCGGAGAGTTTATTGAGCGAGTTTTCAAAGTATGGTGAAATCGAAGAGGGACCGTTAGGGTTTGATAAAGCTAGTGGGAAAACTAGAGGTTTTGCTTTCTTTGTGTATAAAACCGAAGAGGGTGCACGGAATTCACTGGTAGAGTCTGCCAAAACCGTTGATGGTCACCAAGTGATTTGCAAGTTGGCCGTGGATAACAAAAAGCCTAAGCCCGGGAACCAAAACCCATCAGGCTTTCCAGTGGATAATTCTAACTCTAATTATCATGCTCCTAATGCTTCAATGATGCCGCAATACGGTGCTCCTCCTAATGCTTATGGGCAACCACCTTATGGTAATCAGGTTCCTTCTGGCGGTGGGTATGGGCCGGGAATTGGTGCAGGTGCCCCTCAGTACGGCGGCCCGGTTCCTGGACCCGGGCCTGTTTCCGGTCCAAGGGCGCATCCTCCCTCTGTTGGTGGATACCCTGATGGTTCACAGTATGGTTACCCATCACAGCCTATGCCTATGCAGAGACCCCCTAATGGAGGAATGTACCAAGGCGTGCCACCTTATTATTGA 1092 0.5174 MEFSKKRKTEENGDTNSPPPSNDAAVTTTLTPEDIHKILQPFTQDQLLDLLKSAALQHPNVLDAVRSVADRDTSRRKLFVRGLSGETTSETLRAVFAAYGDLDEAIVIFDKSTSRSKGYGFVVFRHVDGAILALKEPSKKIDGRMTVTQLAAAGAGSTGGDVSARKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGARNSLVESAKTVDGHQVICKLAVDNKKPKPGNQNPSGFPVDNSNSNYHAPNASMMPQYGAPPNAYGQPPYGNQVPSGGGYGPGIGAGAPQYGGPVPGPGPVSGPRAHPPSVGGYPDGSQYGYPSQPMPMQRPPNGGMYQGVPPYY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2733 363 PANTHER GEO13361P1-RELATED 1 336 - -
Psa7g2733 363 MobiDBLite consensus disorder prediction 1 25 - -
Psa7g2733 363 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 336 - -
Psa7g2733 363 Gene3D - 157 266 IPR012677 -
Psa7g2733 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 246 IPR000504 GO:0003723
Psa7g2733 363 SUPERFAMILY RNA-binding domain, RBD 66 151 IPR035979 GO:0003676
Psa7g2733 363 Gene3D - 67 155 IPR012677 -
Psa7g2733 363 SUPERFAMILY RNA-binding domain, RBD 162 264 IPR035979 GO:0003676
Psa7g2733 363 SMART rrm1_1 166 238 IPR000504 GO:0003723
Psa7g2733 363 SMART rrm1_1 77 149 IPR000504 GO:0003723
Psa7g2733 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 153 IPR000504 GO:0003723
Psa7g2733 363 MobiDBLite consensus disorder prediction 320 363 - -
Psa7g2733 363 CDD RRM_RBM24_RBM38_like 76 150 - -
Psa7g2733 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 144 IPR000504 GO:0003723
Psa7g2733 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 233 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2733 Psa-Chr7 196019006 196023007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2733 148 337 C2H2 Transcription Factor Family AT2G19380 28.636 1.15e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2733 K12741 - gmx:100804230 437.573