Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2686 ATGCAGCAAAAGTTGAGGGAGGGAGAAGTTTATGCTGATGGTGAAGGGGAAGATACGGACGCTGTTATGAAGTCGACAACACCTCATATGTTCTGCAAGACTCTGACTGCTTCTGATACTAGCACTCATGGTGGATTCTCCGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCACCCCTGGATTACTCTCAACAAAGACCTTCGCAAGAGCTTGTGGCGAAGGATCTGCACGGCCAGGAGTGGAAGTTTCGCCATATTTATAGAGGGCAGCCACGAAGGCATTTGCTTACAACTGGATGGAGTGCATTTGTTAACAAGAAGAAACTTGTATCTGGAGACGCTGTTCTTTTCCTCAGGGGTGAGGATGGAGAGCTGAGATTGGGAATCCGTAGGGCAGCTCAATTGAAAAACTGCGGTAACTTTTCATCCCTCTCTGGCCAGCAGTTGAATCTTGGAAGCCTTACAGATGTAGTTAAGGCTTTATCTACTAGATGTGCCTTTAGTGTTCACTATAATCCGAGGGTTGGTTCGTCTGAGTTTATCATACCTATCCACAAATTCTTGAAGAGCCGTGATTATTCTTACTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAGTCTGAAGATGCTGCAGAGCGAAGGTTCACGGGATTAATAATCGGAACTTCTGATGTGGATCCTGTTAGATGGCCTGGGTCGAAATGGAAATGCTTAATGGTAAGGTGGGATGACTTGGAAGCGTCGAGGCTTAACAGGATTTCACCATGGGAGATAGAGCCCGCTGGCTCAGCTTCCACTACCAATTGTTCAATGGCAGCTAGTTTGAAGAGGACCAAGATTGGATTACCTTCAACAAAGCTAGAATTTCCAGTTCCAGATGGATTTGGGACATCAGACTTTGGGGAATCGCTGCGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATGTTAGGTGCTGATACTATTTTCAATAGTATCAGTGCTCGGAGTCACCACCAGTTATCTGAGTTACGAAGGTGCTATCCTGGTTCAAACTATCCCGGGATTGCATCAACAGGAAATAGCATCAGAATCCCACAAATGAATTCTGATGTTTCCTGCAATGGCTTTGGCGAATCGTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATACGGAAGAGCCTTGTCTGTCGTCGACAAGGCTTCTAGAAACGGTGGCTTTGGACTTTTTGATGTGCCGAGATCCAGAAATGGATGGTATTCTCAAATGAATAACTCGCATTATCATCCATCCGCATTAATGTACCACCACCAGCAAGGTGCCAATCCAGTTTCAAACTTGGATTACAATAACAAAATCAATCCAGCGATGGAAGATAAAGTCCGTCAAAGAGGATCATATCACGCTTCTGAAGACACAAATTCATTCGCTACAGATTCCATTTCACTACAGATAGGCAGTCAAGAGTTGGTTTCCACATGTAAAAGTAGCTGCAGAGTGTTTGGTTTTTCATTAACAGACGGTGCTCCCGTTGCAAATAAACAGGCGGAACCATCTGCAGTCACTATAAATCCTGGACCTTCGTCCTTCACAAGGCACGTTGAAGAGGATTTCAATCCAAAGCATTCACTCAGGAGCAAGGCCGTAGAAAGTTATTGTACCAAAGTAAGCAATCTTCATCCTGTGCGAAACATGGTAATCGACAGAGTATTCTAG 1713 0.4495 MQQKLREGEVYADGEGEDTDAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKNCGNFSSLSGQQLNLGSLTDVVKALSTRCAFSVHYNPRVGSSEFIIPIHKFLKSRDYSYSVGMRFRMRFESEDAAERRFTGLIIGTSDVDPVRWPGSKWKCLMVRWDDLEASRLNRISPWEIEPAGSASTTNCSMAASLKRTKIGLPSTKLEFPVPDGFGTSDFGESLRFQKVLQGQEMLGADTIFNSISARSHHQLSELRRCYPGSNYPGIASTGNSIRIPQMNSDVSCNGFGESFRFQKVLQGQEILPSQPYGRALSVVDKASRNGGFGLFDVPRSRNGWYSQMNNSHYHPSALMYHHQQGANPVSNLDYNNKINPAMEDKVRQRGSYHASEDTNSFATDSISLQIGSQELVSTCKSSCRVFGFSLTDGAPVANKQAEPSAVTINPGPSSFTRHVEEDFNPKHSLRSKAVESYCTKVSNLHPVRNMVIDRVF* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2686 570 SUPERFAMILY DNA-binding pseudobarrel domain 23 138 IPR015300 -
Psa7g2686 570 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 470 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa7g2686 570 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 474 555 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa7g2686 570 Pfam Auxin response factor 158 238 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa7g2686 570 Gene3D - 194 268 - -
Psa7g2686 570 ProSiteProfiles B3 DNA-binding domain profile. 31 133 IPR003340 GO:0003677
Psa7g2686 570 CDD B3_DNA 29 131 IPR003340 GO:0003677
Psa7g2686 570 Pfam B3 DNA binding domain 31 132 IPR003340 GO:0003677
Psa7g2686 570 PANTHER AUXIN RESPONSE FACTOR 474 555 - -
Psa7g2686 570 PANTHER AUXIN RESPONSE FACTOR 5 470 - -
Psa7g2686 570 Gene3D - 29 133 IPR015300 -
Psa7g2686 570 SMART B3_2 31 133 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2686 Psa-Chr7 191516932 191521464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2686 30 404 B3 DNA Binding Superfamily AT2G33860 55.053 5.76e-141 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa7g2686 B3 5.3e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2686 K14486 - gmx:100808119 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g2686 7 191516932 191521464 Psa7g2686 7 191516932 191521464 ECH