Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2657 ATGTTAAGGCCAAGATTCAAGACAAGGAAGGGATCCCTCCAGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTGGAGGATGAACAAGGAAGGGATCCCTCCAGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAACATACAGAAGGAATCAACTCTCCATTTGGTGCTTCGTCTCCGCGGCGGGATGCAAATCTTTGTGAAGACTCTCACTGGAAAGACCATTACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTCAAAGCCAAGATTCAGGATAAAGAGGGCATTCCACCTGACCAACAGAGGCTCATCTTTGCTGGCAAACAACTTGAGGATGGCAGAACTTTAGCTGACTACAACATCCAGAAAGAATCCACCCTTCATCTGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTGGAGAGTTCGGACACCATAGACAATGTGAAGGCCAAGATACAGGACAAAGAGGGTATTCCACCAGATCAGCAAAGGTTGATTTTTGCTGGTAAGCAGCTCGAAGATGGAAGAACTCTGGCTGATTACAACATCCAGAAAGAGTCCACTCTTCATCTTGTTTTGAGACTTCGGGGTGGTATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCAGACACAATTGACAATGTCAAGGCTAAGATACAGGATAAGGAGGGTATTCCCCCAGATCAGCAAAGGTTGATTTTTGCTGGGAAACAACTCGAAGATGGACGAACCTTGGCTGATTACAATATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGTATGCAGATCTTTGTGAAAACTTTGACAGGAAAGACCATTACTTTGGAGGTAGAAAGTTCAGACACGATTGATAACGTGAAGGCAAAAATTCAGGATAAGGAGGGAATCCCACCAGATCAGCAGAGGTTGATATTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGCCTTCGTGGTGGATTTTAA 1137 0.4661 MLRPRFKTRKGSLQTSSVSFLLASSWRMNKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2657 378 SUPERFAMILY Ubiquitin-like 72 149 IPR029071 -
Psa7g2657 378 PRINTS Ubiquitin signature 84 104 IPR019956 -
Psa7g2657 378 PRINTS Ubiquitin signature 105 125 IPR019956 -
Psa7g2657 378 PRINTS Ubiquitin signature 126 147 IPR019956 -
Psa7g2657 378 ProSitePatterns Ubiquitin domain signature. 176 201 IPR019954 -
Psa7g2657 378 SUPERFAMILY Ubiquitin-like 149 225 IPR029071 -
Psa7g2657 378 ProSitePatterns Ubiquitin domain signature. 100 125 IPR019954 -
Psa7g2657 378 SUPERFAMILY Ubiquitin-like 29 73 IPR029071 -
Psa7g2657 378 SMART ubq_7 74 145 IPR000626 GO:0005515
Psa7g2657 378 SMART ubq_7 2 69 IPR000626 GO:0005515
Psa7g2657 378 SMART ubq_7 302 373 IPR000626 GO:0005515
Psa7g2657 378 SMART ubq_7 226 297 IPR000626 GO:0005515
Psa7g2657 378 SMART ubq_7 150 221 IPR000626 GO:0005515
Psa7g2657 378 Gene3D - 226 301 - -
Psa7g2657 378 Gene3D - 27 74 - -
Psa7g2657 378 Gene3D - 302 378 - -
Psa7g2657 378 Gene3D - 75 149 - -
Psa7g2657 378 Gene3D - 150 225 - -
Psa7g2657 378 PANTHER UBIQUITIN 13 29 204 - -
Psa7g2657 378 PANTHER UBIQUITIN 13 300 377 - -
Psa7g2657 378 PANTHER UBIQUITIN 13 72 280 - -
Psa7g2657 378 PANTHER UBIQUITIN 13 150 356 - -
Psa7g2657 378 PANTHER UBIQUITIN 300 377 - -
Psa7g2657 378 PANTHER UBIQUITIN 150 356 - -
Psa7g2657 378 PANTHER UBIQUITIN 29 204 - -
Psa7g2657 378 PANTHER UBIQUITIN 72 280 - -
Psa7g2657 378 CDD Ubl_ubiquitin 226 301 - -
Psa7g2657 378 SUPERFAMILY Ubiquitin-like 301 377 IPR029071 -
Psa7g2657 378 ProSiteProfiles Ubiquitin domain profile. 29 73 IPR000626 GO:0005515
Psa7g2657 378 ProSiteProfiles Ubiquitin domain profile. 302 377 IPR000626 GO:0005515
Psa7g2657 378 SUPERFAMILY Ubiquitin-like 224 301 IPR029071 -
Psa7g2657 378 ProSiteProfiles Ubiquitin domain profile. 150 225 IPR000626 GO:0005515
Psa7g2657 378 CDD Ubl_ubiquitin 302 377 - -
Psa7g2657 378 ProSiteProfiles Ubiquitin domain profile. 226 301 IPR000626 GO:0005515
Psa7g2657 378 CDD Ubl_ubiquitin 74 149 - -
Psa7g2657 378 ProSitePatterns Ubiquitin domain signature. 328 353 IPR019954 -
Psa7g2657 378 ProSiteProfiles Ubiquitin domain profile. 74 149 IPR000626 GO:0005515
Psa7g2657 378 CDD Ubl_ubiquitin 150 225 - -
Psa7g2657 378 Pfam Ubiquitin family 152 223 IPR000626 GO:0005515
Psa7g2657 378 Pfam Ubiquitin family 30 71 IPR000626 GO:0005515
Psa7g2657 378 Pfam Ubiquitin family 304 375 IPR000626 GO:0005515
Psa7g2657 378 Pfam Ubiquitin family 228 299 IPR000626 GO:0005515
Psa7g2657 378 Pfam Ubiquitin family 76 147 IPR000626 GO:0005515
Psa7g2657 378 ProSitePatterns Ubiquitin domain signature. 252 277 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2657 Psa-Chr7 189786375 189788757 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2657 29 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 95.652 8.61e-25 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2657 - K08770 ming:122068481 677.937