Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2653 ATGGCTTCTGCACATTCTTCAGCTCTCAGTTCTTTCTCTTCTCTCTCTTTCCGGTCCTCTTCTTCCTCCTCTTGTTTCTCTCTCCTCCCCACAACCAACAAACTCACATTCCCTCTCCTCACCAAAACCCCACTCTCCATCTCCACAACCACCACTCTCTCCTTCACCGCCAAAGCCAACTCCTTCGACGACAACGCACCTAACTCCTTCGACGACAACGCACCTATCTCCGAAGAAGTCATTCCATTCAACCCACCCGAAGTCCCGGAAGGCTTCATCGCCCCACCTTCCATAGACGACGGACCAGTCGAAGACGAAGACGAAATCGCCGCCGCGTATGAAAAGATTTACGGCGTGGGGTACAGTGGAGTGAGTGTTCTCGGAAATGATATATACGCCATGGATGCGAAGAAGAGGAAGGCTACTGGGTTTGGCTCTGGAGCGAAGAAGAAAGAGAGGTTTAGAGATGGAATGGAAGAAAGAGTTGTTCAAGTGAGAAGGGTTACTAAGGTTGTTAAAGGAGGGAAACAGATGAGGTTTAGGGCTGTTGTTGTTGTTGGTGATAAGAAAGGACAAGTTGGTGTTGGCCTTGGGAAGGCTAAGGAAGTTGTTTCTGCTGTTCAGAAAGCTGCTGTTAATGCTAGGAGGAATCTTGTTAGAGTCCCCATGACTAAGTACTCCACTTTTCCTCATAGATCAGACGGAGATTATGGAGCAGCAAAGGTGATGCTTAGACCCGCTTCACCTGGTACCGGAGTTATTGCAGGTGGTTCTGTGAGAATTGTTCTTGAACTGGCAGGTGTTGAAAATGCTTTGGGGAAACAACTCGGAAGTGACAATGCACTCAACAATGCCAGAGCAACTGTAGCTGCAGTGCAGAAAATGAAGCAGTACAGTCAGGTCGCCGAAGAGCGTGGGATCCCTAAGGAAGAGTTATGGAAGTAA 945 0.4857 MASAHSSALSSFSSLSFRSSSSSSCFSLLPTTNKLTFPLLTKTPLSISTTTTLSFTAKANSFDDNAPNSFDDNAPISEEVIPFNPPEVPEGFIAPPSIDDGPVEDEDEIAAAYEKIYGVGYSGVSVLGNDIYAMDAKKRKATGFGSGAKKKERFRDGMEERVVQVRRVTKVVKGGKQMRFRAVVVVGDKKGQVGVGLGKAKEVVSAVQKAAVNARRNLVRVPMTKYSTFPHRSDGDYGAAKVMLRPASPGTGVIAGGSVRIVLELAGVENALGKQLGSDNALNNARATVAAVQKMKQYSQVAEERGIPKEELWK* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2653 314 Hamap 30S ribosomal protein S5 [rpsE]. 134 311 IPR005712 GO:0003735|GO:0006412|GO:0015935
Psa7g2653 314 TIGRFAM rpsE_bact: ribosomal protein uS5 157 308 IPR005712 GO:0003735|GO:0006412|GO:0015935
Psa7g2653 314 SUPERFAMILY dsRNA-binding domain-like 154 223 - -
Psa7g2653 314 PANTHER RIBOSOMAL S SUBUNIT 6 314 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Psa7g2653 314 Pfam Ribosomal protein S5, N-terminal domain 159 222 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Psa7g2653 314 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 6 314 - -
Psa7g2653 314 Pfam Ribosomal protein S5, C-terminal domain 235 305 IPR005324 GO:0003735|GO:0005840|GO:0006412
Psa7g2653 314 ProSitePatterns Ribosomal protein S5 signature. 175 207 IPR018192 -
Psa7g2653 314 SUPERFAMILY Ribosomal protein S5 domain 2-like 228 306 IPR020568 -
Psa7g2653 314 Gene3D - 148 219 - -
Psa7g2653 314 Gene3D - 224 313 IPR014721 -
Psa7g2653 314 ProSiteProfiles S5 double stranded RNA-binding domain profile. 158 221 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2653 158 314 Cytoplasmic Ribosomal Protein Gene Family AT1G58380 30.909 1.98e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2653 K02988 - gmx:100820232 378.637