Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2652 ATGGATCCTTCAACTCCATATCTCACGTCTAACTATTCAATATTAGATAATCCCATGAATGCAAATTTCTCAACGAATCAACCTCATCAAGATTATTATGTTCCATTAGGGCAAAGTCTCAATCCTTCTATAATTCCAAATGCTCCTCCAGTTCATGCTCAAAGAGAAGACGATCAAAAGAAGATGGAAGCAAGGAGGTGCAAAATTGCACGAGAACAAAGGAGACAAATATTACGGCTTAGAAGTACTCGTGCTTCAAAGGCCCCTGAAGATACAATAATGAGACCCCCAAATTATAGAGACATCCAAAAAAGAACTCCACATGTTTTCTTCACTTCAGATGGAAAGCAATTTGAAGAAATTTTGACGAAGAAGTTAACAAATAGCGATGTTAACCAGCTAGGTCGAATTGTCCTTCCAAAGAGGGAGGCCGAGGAAAAGCTTCCGACGCCAAGCAAAGAAGGGATCAATATTGTTTTTAAGGATATACATTCTAGGCTTGAATGGAACGTGAAATTCAAATACTGGATCAATGTTACATCTAGAATGTATGTTCTTGAAAATACAGTGAATATAGTGAAGCATTATGGATTATGTATGGGAGATTATTTAAGCCTTTATGAGGACGAATCTAAAAACATGGTTAGTGCTACTTTTTTTTAG 663 0.368 MDPSTPYLTSNYSILDNPMNANFSTNQPHQDYYVPLGQSLNPSIIPNAPPVHAQREDDQKKMEARRCKIAREQRRQILRLRSTRASKAPEDTIMRPPNYRDIQKRTPHVFFTSDGKQFEEILTKKLTNSDVNQLGRIVLPKREAEEKLPTPSKEGINIVFKDIHSRLEWNVKFKYWINVTSRMYVLENTVNIVKHYGLCMGDYLSLYEDESKNMVSATFF* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2652 220 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 16 217 IPR044800 GO:0003700
Psa7g2652 220 Pfam B3 DNA binding domain 123 214 IPR003340 GO:0003677
Psa7g2652 220 SMART B3_2 122 218 IPR003340 GO:0003677
Psa7g2652 220 SUPERFAMILY DNA-binding pseudobarrel domain 121 213 IPR015300 -
Psa7g2652 220 CDD B3_DNA 121 212 IPR003340 GO:0003677
Psa7g2652 220 Gene3D - 111 218 IPR015300 -
Psa7g2652 220 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 16 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2652 Psa-Chr7 189700636 189704163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2652 112 217 B3 DNA Binding Superfamily AT1G28300 53.271 7.49e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa7g2652 B3 1.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2652 - - mtr:MTR_4g088605 245.358