Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2647 ATGGAAACAAGGTCAGAGGGAAAAAGAACATGGAGGCACAAAGAGGTGGTGAACAATCATGAAGAGCTGGAACATGAAGATGAAGATGAAATGGATTTTGAAGAGGAGGAGGAAGGTAGAAAGAAGAGGGTAGTAACTGTAACAGATCTGTATAGTAGACCAAGGTCCAAAGCTGGAGGGTCGAATTATACTACACCATGTTGTCAAGTGGAGAATTGTGATGCTGATCTAAGTGAAGCTAAACAGTATCATCGGAGACATAAGGTATGTGAGTATCATGCTAAGGCACCTGCCGTACACATTGCAGAGATGCAGCAAAGGTTTTGTCAGCAATGTAGCAGATTCCATGAGCTATCTGAATTTGATGACACAAAAAGGAGTTGTAGAAGACGTCTGGCGGGGCATAATGAAAGACGTCGCAAAAATGCAAGTGACTTTCAAGGAGAATGA 450 0.4244 METRSEGKRTWRHKEVVNNHEELEHEDEDEMDFEEEEEGRKKRVVTVTDLYSRPRSKAGGSNYTTPCCQVENCDADLSEAKQYHRRHKVCEYHAKAPAVHIAEMQQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKNASDFQGE* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2647 149 PIRSF SBP 5 149 IPR017238 GO:0003677|GO:0003700|GO:0009908
Psa7g2647 149 Pfam SBP domain 68 141 IPR004333 GO:0003677
Psa7g2647 149 Coils Coil 17 37 - -
Psa7g2647 149 Gene3D - 59 129 IPR036893 GO:0003677|GO:0005634
Psa7g2647 149 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 142 IPR044817 GO:0003677
Psa7g2647 149 SUPERFAMILY SBT domain 66 145 IPR036893 GO:0003677|GO:0005634
Psa7g2647 149 MobiDBLite consensus disorder prediction 19 40 - -
Psa7g2647 149 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 25 142 - -
Psa7g2647 149 ProSiteProfiles Zinc finger SBP-type profile. 65 142 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2647 Psa-Chr7 188983722 188988361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2647 59 145 SBP-box Gene Family AT2G33810 68.966 1.89e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa7g2647 SBP 5.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2647 - - gmx:100527199 179.489