Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2636 ATGTTAAGGCCAAGATTCAAGACAAGGAAGGGATCCCTCCAGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTGGAGGATGTACAAGGAAGGGATCCCTCCAGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAACATACAGAAGGAATCAACTCTCCATTTGGTGCTTCGTCTCCGTGGTGGGATGCAAATCTTTGTGAAGACTCTCACTGGAAAGACCATTACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTCAAAGCCAAGATTCAGGATAAAGAGGGCATTCCACCTGACCAACAGAGGCTCATCTTTGCTGGCAAACAACTTGAGGATGGCAGAACTTTAGCAGACTACAACATCCAGAAAGAATCCACCCTTCATCTGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGACACCATAGACAATGTGAAGGCCAAGATACAGGACAAAGAGGGTATTCCACCAGATCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGAAGAACTCTGGCTGATTACAACATCCAGAAAGAGTCCACTCTTCATCTTGTTTTGAGACTTCGGGGTGGTATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACAATTATACATCCAGAAAGAATTTTTGTGAAGACCCTTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCAGACACAATTGACAATGTGAAGGCTAAGATACAGGACAAGGAGGGCATTCCCCCAGACCAGCAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGACGGACCTTGGCTGATTACAATATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTCTGAGGGGAGGTATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACTTTGGAGGTAGAAAGTTCAGACACGATAGATAATGTGAAGGCAAAAATACAGGACAAGGAGGGAATCCCACCAGATCAGCAGAGGTTGATATTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGCCTTCGCGGTGGATTTTAA 1185 0.4624 MLRPRFKTRKGSLQTSSVSFLLASSWRMYKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIIHPERIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2636 394 Pfam Ubiquitin family 30 71 IPR000626 GO:0005515
Psa7g2636 394 Pfam Ubiquitin family 152 223 IPR000626 GO:0005515
Psa7g2636 394 Pfam Ubiquitin family 320 391 IPR000626 GO:0005515
Psa7g2636 394 Pfam Ubiquitin family 244 315 IPR000626 GO:0005515
Psa7g2636 394 Pfam Ubiquitin family 76 147 IPR000626 GO:0005515
Psa7g2636 394 Gene3D - 74 149 - -
Psa7g2636 394 Gene3D - 150 227 - -
Psa7g2636 394 Gene3D - 27 73 - -
Psa7g2636 394 Gene3D - 318 394 - -
Psa7g2636 394 Gene3D - 239 317 - -
Psa7g2636 394 ProSitePatterns Ubiquitin domain signature. 176 201 IPR019954 -
Psa7g2636 394 ProSitePatterns Ubiquitin domain signature. 344 369 IPR019954 -
Psa7g2636 394 SUPERFAMILY Ubiquitin-like 317 393 IPR029071 -
Psa7g2636 394 PRINTS Ubiquitin signature 84 104 IPR019956 -
Psa7g2636 394 PRINTS Ubiquitin signature 105 125 IPR019956 -
Psa7g2636 394 PRINTS Ubiquitin signature 126 147 IPR019956 -
Psa7g2636 394 PANTHER UBIQUITIN 13 30 204 - -
Psa7g2636 394 PANTHER UBIQUITIN 13 73 239 - -
Psa7g2636 394 PANTHER UBIQUITIN 13 243 393 - -
Psa7g2636 394 PANTHER UBIQUITIN 243 393 - -
Psa7g2636 394 PANTHER UBIQUITIN 30 204 - -
Psa7g2636 394 PANTHER UBIQUITIN 73 239 - -
Psa7g2636 394 ProSitePatterns Ubiquitin domain signature. 100 125 IPR019954 -
Psa7g2636 394 ProSitePatterns Ubiquitin domain signature. 268 293 IPR019954 -
Psa7g2636 394 ProSiteProfiles Ubiquitin domain profile. 242 317 IPR000626 GO:0005515
Psa7g2636 394 ProSiteProfiles Ubiquitin domain profile. 30 73 IPR000626 GO:0005515
Psa7g2636 394 SMART ubq_7 150 221 IPR000626 GO:0005515
Psa7g2636 394 SMART ubq_7 2 69 IPR000626 GO:0005515
Psa7g2636 394 SMART ubq_7 318 389 IPR000626 GO:0005515
Psa7g2636 394 SMART ubq_7 74 145 IPR000626 GO:0005515
Psa7g2636 394 SMART ubq_7 242 313 IPR000626 GO:0005515
Psa7g2636 394 ProSiteProfiles Ubiquitin domain profile. 318 393 IPR000626 GO:0005515
Psa7g2636 394 SUPERFAMILY Ubiquitin-like 243 317 IPR029071 -
Psa7g2636 394 ProSiteProfiles Ubiquitin domain profile. 150 225 IPR000626 GO:0005515
Psa7g2636 394 CDD Ubl_ubiquitin 318 393 - -
Psa7g2636 394 SUPERFAMILY Ubiquitin-like 73 149 IPR029071 -
Psa7g2636 394 CDD Ubl_ubiquitin 74 149 - -
Psa7g2636 394 ProSiteProfiles Ubiquitin domain profile. 74 149 IPR000626 GO:0005515
Psa7g2636 394 SUPERFAMILY Ubiquitin-like 149 225 IPR029071 -
Psa7g2636 394 CDD Ubl_ubiquitin 243 317 - -
Psa7g2636 394 CDD Ubl_ubiquitin 150 225 - -
Psa7g2636 394 SUPERFAMILY Ubiquitin-like 30 73 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2636 Psa-Chr7 188234659 188235886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2636 30 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.778 1.53e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2636 - K08770 pop:7454416 667.151