Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa7g2613 | ATGCAAAGCCAACAAGACAACGACGACGGCCCACCACCCGGATGGCAACCTATCCCTACTCCCCAACGCCCAGCGCCACTTCCATCCGGTTTTGCTCAAATGGTTTGTGGTTCTTGTAGACGTCTGCTTTCGTATCCATCAGGTGGCAAACATGTCAAATGTTCATGCTGTCAAACTGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTAAGTGTGGGAGTTGTACGCTATTGCTAATGTATCCATATGGTGCTTCACAGGTCAGGTGTTCATCATGCCGGTTTGTGACAGAAATTGGGGCAAACAACAAGCGGCCTCCATGGTCTGTACAACAAAGTAAACCAACTCCTCCCAAAGCTAGCTGTTAG | 375 | 0.4827 | MQSQQDNDDGPPPGWQPIPTPQRPAPLPSGFAQMVCGSCRRLLSYPSGGKHVKCSCCQTVNIVLEADQVGQVKCGSCTLLLMYPYGASQVRCSSCRFVTEIGANNKRPPWSVQQSKPTPPKASC* | 125 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa7g2613 | 124 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Psa7g2613 | 124 | Pfam | LSD1 zinc finger | 74 | 98 | IPR005735 | - | |
| Psa7g2613 | 124 | Pfam | LSD1 zinc finger | 36 | 60 | IPR005735 | - | |
| Psa7g2613 | 124 | PANTHER | PROTEIN LOL2 | 16 | 120 | - | - | |
| Psa7g2613 | 124 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 33 | 63 | IPR005735 | - | |
| Psa7g2613 | 124 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 71 | 99 | IPR005735 | - | |
| Psa7g2613 | 124 | PANTHER | PROTEIN LSD1 | 16 | 120 | IPR040319 | - |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2C2-LSD | Psa7g2613 | zf-LSD1 | 1.2e-09 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa7g2613 | - | - | gmx:100780865 | 218.394 |