Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2610 ATGGAGTTTGAGCATGAAGATGTCTTTTCCAAAGAATGGAATTCCATTGGAAGTTCTATGACAGAGACAGAGAAGAATAGTGAGAGTTGTTTTGATTGCAACATCTGTTTAGATTTTGCACATGAACCAGTAGTGACACTCTGTGGTCACCTATTCTGTTGGTCCTGCATCTACAAATGGCTCTATGTGCAAAGTGCTTCTCTTGCACCTGATGAGCCACCACAGTGTCCAGTTTGCAAACATGAAATATCTCACACCAAAATGGTCCCTCTCTACGGCAGAGGCCAGACCGCGATTCACGACCGGAAAACTACGCTTCAGGATGTTTCTATACCACCAAGGCCACCTGCTTCAGGAATTCAATCTCTGTTTGCAATGGCAACATTGCCTCAAAGGGGTCATCATCAGCAGCAGCAGCTTCCGTATCGTAATCCTTATCAGAGTCAAAATATTAACCAAGAGAATGACACAGCAGCTCAAATGCTGAATCTTATGACACCAGTATTTCCACACTTTATCTTTGGTAACTCGGAAAATTCTGGTCATGTCATGGGAAGTAGTAGCTCTAGTTGGAGAAGGCAAGAGATGCTGGCAAACAAATCGTTGAATAGAATATCATTTTTTCTGTTTTTATGCTTTGTCCTGTGTTTTATCTTCTTCTGA 663 0.4208 MEFEHEDVFSKEWNSIGSSMTETEKNSESCFDCNICLDFAHEPVVTLCGHLFCWSCIYKWLYVQSASLAPDEPPQCPVCKHEISHTKMVPLYGRGQTAIHDRKTTLQDVSIPPRPPASGIQSLFAMATLPQRGHHQQQQLPYRNPYQSQNINQENDTAAQMLNLMTPVFPHFIFGNSENSGHVMGSSSSSWRRQEMLANKSLNRISFFLFLCFVLCFIFF* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2610 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 5 220 - -
Psa7g2610 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 220 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa7g2610 220 SUPERFAMILY RING/U-box 28 92 - -
Psa7g2610 220 SMART ring_2 33 79 IPR001841 -
Psa7g2610 220 Pfam Zinc finger, C3HC4 type (RING finger) 33 79 IPR018957 GO:0046872
Psa7g2610 220 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Psa7g2610 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 104 IPR013083 -
Psa7g2610 220 CDD RING-HC_AtRMA_like 31 80 - -
Psa7g2610 220 ProSiteProfiles Zinc finger RING-type profile. 33 80 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2610 Psa-Chr7 186934338 186936098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2610 5 206 C3H Transcription Factor Family AT4G27470 36.199 3.32e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2610 K10666 - gmx:100782827 217.238